A simple wrapper for grabbing data for completed and running jobs.
Developed for the HPC systems at University of Arizona. High memory nodes are differentiated from standard nodes with AvailableFeatures=hi_mem.
Termos e acordos Ao iniciar este projeto, você concorda com as diretrizes do Código de Ética e Conduta e do Manual da Pessoa Estudante da Trybe. Boas
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Howdy,
Blake J pointed us (UAB Research Computing) to your nice slurm-wrapper repo :-)
While job-history and system-busy work great on our cluster, nodes-busy is crashing on our cluster with the following:
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❯ ./bin/nodes-busy
nodes-busy: visualize live system resource usage.
Trouble seeing the output? Try 'nodes-busy --ascii'
Traceback (most recent call last):
File "./bin/nodes-busy", line 766, in <module>
merged = merge(job_data, node_data)
File "./bin/nodes-busy", line 330, in merge
nodes_dictionary[node]["JOBS"][job] = {"CPUs":cpus, "GPUs":jobs_dictionary[job]["GPUAlloc"],"EndTime":jobs_dictionary[job]["EndTime"],"Partition":jobs_dictionary[job]["Partition"],"Restarts":jobs_dictionary[job]["Restarts"]}
KeyError: 'GPUAlloc'
I'm digging through the code, but figured I'd post this for tracking purposes.
Thanks, Mike
Howdy, noticed the following error today when running nodes-busy on our cluster.
> nodes-busy
Traceback (most recent call last):
File "/share/apps/rc/bin/nodes-busy", line 1177, in <module>
job_data = get_scontrol_job_data()
File "/share/apps/rc/bin/nodes-busy", line 370, in get_scontrol_job_data
output = out.decode('utf-8').split("\n")
UnicodeDecodeError: 'utf-8' codec can't decode byte 0xad in position 53196: invalid start byte
I have no idea what's in position 53196, but I fixed the issue with the following addition to output.decode to ignore errors:
diff --git a/bin/nodes-busy b/bin/nodes-busy
index 6fb1744..aee728f 100755
--- a/bin/nodes-busy
+++ b/bin/nodes-busy
@@ -367,7 +367,7 @@ def get_scontrol_job_data(target_job = None):
sys.exit(1)
# Split up space-delimited output into a job dictionary
- output = out.decode('utf-8').split("\n")
+ output = out.decode('utf-8', 'ignore').split("\n")
for job in output:
details = job.split(' ')
for i in details:
Added new argument to past-jobs to support selecting jobs by someone other than the user running the script:
$ past-jobs -d 30 -u flakrat
Jobs submitted by user flakrat in last 30 days.
JobID Start User JobName Partition Account State ExitCode
------------------------------------------------------------------------------------------------
14364561 2022-06-02 flakrat hostname express flakrat CANCELLED 0:0
14385956 2022-06-05 flakrat hostname express flakrat COMPLETED 0:0
14850816 2022-06-12 flakrat hostname express flakrat COMPLETED 0:0
Full Changelog: https://github.com/SaraMWillis/slurm-wrappers/compare/v0.1.0...v0.2.0
Source code(tar.gz)The scripts in this repository have some bits and pieces that are specific to the HPC setup at University of Arizona. These parts are being cleaned up.
Source code(tar.gz)This repo contains a library that aims at automatizing some Density Functional Theory (DFT) workflows in VASP by using the ASE toolkit.
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