Readings for "A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction."

Last update: Jan 05, 2023

Overview

Polypharmacy - DDI - Synergy Survey

The Survey Paper

This repository accompanies our survey paper A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction.

If you find the survey or this repository useful in your research, please consider citing our paper:

@inproceedings{poliddicombisurvey,
       title = {{A Unified View of Relational Deep Learning for Polypharmacy Side Effect, Combination Therapy, and Drug-Drug Interaction Prediction}},
       author = {Benedek Rozemberczki and Stephen Bonner and Andriy Nikolov and Michaël Ughetto and Sebastian Nilsson and Eliseo Papa},
       year = {2021}
}

License

Apache 2.0

Comments

✨ Add "Relational Gaifman Models" + dataset
Add "Efficient Learning of Relational Gaifman Models using Probabilistic Logic" and dataset links

It might make sense to refer to one of the papers with respect to "high-level" or "low-level" models (see related publications here: https://srlearn.github.io/relational-datasets/dataset_descriptions/drug_interactions/). For now, this pull request adds links to the 2019 PLP paper under "Datasets."
opened by hayesall 0

Releases(v_00002)

v_00002(Jan 3, 2022)
What's Changed

✨ Add "Relational Gaifman Models" + dataset by @hayesall in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

New Contributors

@hayesall made their first contribution in https://github.com/AstraZeneca/awesome-drug-pair-scoring/pull/1

Full Changelog: https://github.com/AstraZeneca/awesome-drug-pair-scoring/compare/v_00001...v_00002
Source code(tar.gz)
Source code(zip)
v_00001(Nov 29, 2021)
The repository covers deep learning papers that solve these tasks:

Drug - Drug Interaction Prediction

Polypharmacy Side Effect Prediction

Drug Combination Synergy Scoring

Source code(tar.gz)
Source code(zip)

Owner

AstraZeneca

Data and AI: Unlocking new science insights

GitHub Repository

Multi-label classification of retinal disorders

Multi-label classification of retinal disorders This is a deep learning course project. The goal is to develop a solution, using computer vision techn

1 Jan 29, 2022

Mall-Customers-Segmentation - Customer Segmentation Using K-Means Clustering

Overview Customer Segmentation is one the most important applications of unsupervised learning. Using clustering techniques, companies can identify th

2 Jan 03, 2022

FCOSR: A Simple Anchor-free Rotated Detector for Aerial Object Detection

FCOSR: A Simple Anchor-free Rotated Detector for Aerial Object Detection FCOSR: A Simple Anchor-free Rotated Detector for Aerial Object Detection arXi

59 Nov 29, 2022

Official PyTorch implementation of the paper "Self-Supervised Relational Reasoning for Representation Learning", NeurIPS 2020 Spotlight.

Official PyTorch implementation of the paper: "Self-Supervised Relational Reasoning for Representation Learning" (2020), Patacchiola, M., and Storkey,

135 Jan 03, 2023

Code for "PV-RAFT: Point-Voxel Correlation Fields for Scene Flow Estimation of Point Clouds", CVPR 2021

PV-RAFT This repository contains the PyTorch implementation for paper "PV-RAFT: Point-Voxel Correlation Fields for Scene Flow Estimation of Point Clou

43 Dec 05, 2022

Python Multi-Agent Reinforcement Learning framework

- Please pay attention to the version of SC2 you are using for your experiments. - Performance is *not* always comparable between versions. - The re

1.3k Jan 05, 2023

Shōgun

The SHOGUN machine learning toolbox Unified and efficient Machine Learning since 1999. Latest release: Cite Shogun: Develop branch build status: Donat

2.9k Jan 04, 2023

[ICCV 2021] A Simple Baseline for Semi-supervised Semantic Segmentation with Strong Data Augmentation

45 Dec 12, 2022

Group Activity Recognition with Clustered Spatial Temporal Transformer

GroupFormer Group Activity Recognition with Clustered Spatial-TemporalTransformer Backbone Style Action Acc Activity Acc Config Download Inv3+flow+pos

28 Dec 12, 2022

Python-experiments - A Repository which contains python scripts to automate things and make your life easier with python

Python Experiments A Repository which contains python scripts to automate things

11 Sep 25, 2022

Multi-view 3D reconstruction using neural rendering. Unofficial implementation of UNISURF, VolSDF, NeuS and more.

Volume rendering + 3D implicit surface Showcase What? previous: surface rendering; now: volume rendering previous: NeRF's volume density; now: implici

682 Jan 04, 2023

REBEL: Relation Extraction By End-to-end Language generation

REBEL: Relation Extraction By End-to-end Language generation This is the repository for the Findings of EMNLP 2021 paper REBEL: Relation Extraction By

222 Jan 06, 2023

MatryODShka: Real-time 6DoF Video View Synthesis using Multi-Sphere Images

Main repo for ECCV 2020 paper MatryODShka: Real-time 6DoF Video View Synthesis using Multi-Sphere Images. visual.cs.brown.edu/matryodshka

75 Dec 13, 2022

DEEPAGÉ: Answering Questions in Portuguese about the Brazilian Environment

DEEPAGÉ: Answering Questions in Portuguese about the Brazilian Environment This repository is related to the paper DEEPAGÉ: Answering Questions in Por

0 Dec 10, 2021

Official PyTorch Implementation of Mask-aware IoU and maYOLACT Detector [BMVC2021]

The official implementation of Mask-aware IoU and maYOLACT detector. Our implementation is based on mmdetection. Mask-aware IoU for Anchor Assignment

46 Sep 29, 2022

Rendering color and depth images for ShapeNet models.

Color & Depth Renderer for ShapeNet This library includes the tools for rendering multi-view color and depth images of ShapeNet models. Physically bas

41 Dec 19, 2022

Text mining project; Using distilBERT to predict authors in the classification task authorship attribution.

DistilBERT-Text-mining-authorship-attribution Dataset used: https://www.kaggle.com/azimulh/tweets-data-for-authorship-attribution-modelling/version/2

1 Jan 13, 2022

python 93% acc. CNN Dogs Vs Cats ( Pytorch )

English | 简体中文（测试中...敬请期待） Cnn-Classification-Dog-Vs-Cat 猫狗辨别 (pytorch版本) CNN Resnet18 的猫狗分类器，基于ResNet及其变体网路系列，对于一般的图像识别任务表现优异，模型精准度高达93%（小型样本）。项目制作于

1 May 22, 2022

Time Delayed NN implemented in pytorch

Pytorch Time Delayed NN Time Delayed NN implemented in PyTorch. Usage kernels = [(1, 25), (2, 50), (3, 75), (4, 100), (5, 125), (6, 150)] tdnn = TDNN

79 Aug 04, 2022

Image Recognition using Pytorch

PyTorch Project Template A simple and well designed structure is essential for any Deep Learning project, so after a lot practice and contributing in

1 Nov 02, 2021