Read and write rasters in parallel using Rasterio and Dask

Related tags

Geolocationpythongdaldaskrasterio
Overview

dask-rasterio

Build Status codecov Join the chat at https://gitter.im/dymaxionlabs/dask-rasterio

dask-rasterio provides some methods for reading and writing rasters in parallel using Rasterio and Dask arrays.

Usage

Read a multiband raster

>>> from dask_rasterio import read_raster

>>> array = read_raster('tests/data/RGB.byte.tif')
>>> array
dask.array<stack, shape=(3, 718, 791), dtype=uint8, chunksize=(1, 3, 791)>

>>> array.mean()
dask.array<mean_agg-aggregate, shape=(), dtype=float64, chunksize=()>
>>> array.mean().compute()
40.858976977533935

Read a single band from a raster

>>> from dask_rasterio import read_raster

>>> array = read_raster('tests/data/RGB.byte.tif', band=3)
>>> array
dask.array<raster, shape=(718, 791), dtype=uint8, chunksize=(3, 791)>

Write a singleband or multiband raster

>>> from dask_rasterio import read_raster, write_raster

>>> array = read_raster('tests/data/RGB.byte.tif')

>>> new_array = array & (array > 100)
>>> new_array
dask.array<and_, shape=(3, 718, 791), dtype=uint8, chunksize=(1, 3, 791)>

>>> prof = ... # reuse profile from tests/data/RGB.byte.tif...
>>> write_raster('processed_image.tif', new_array, **prof)

Chunk size

Both read_raster and write_raster accept a block_size argument that acts as a multiplier to the block size of rasters. The default value is 1, which means the dask array chunk size will be the same as the block size of the raster file. You will have to adjust this value depending on the specification of your machine (how much memory do you have, and the block size of the raster).

Install

Install with pip:

pip install dask-rasterio

Development

This project is managed by Poetry. If you do not have it installed, please refer to Poetry instructions.

Now, clone the repository and run poetry install. This will create a virtual environment and install all required packages there.

Run poetry run pytest to run all tests.

Run poetry build to build package on dist/.

Issue tracker

Please report any bugs and enhancement ideas using the GitHub issue tracker:

https://github.com/dymaxionlabs/dask-rasterio/issues

Feel free to also ask questions on our Gitter channel, or by email.

Help wanted

Any help in testing, development, documentation and other tasks is highly appreciated and useful to the project.

For more details, see the file CONTRIBUTING.md.

License

Source code is released under a BSD-2 license. Please refer to LICENSE.md for more information.

You might also like...
Download and process satellite imagery in Python using Sentinel Hub services.

Description The sentinelhub Python package allows users to make OGC (WMS and WCS) web requests to download and process satellite images within your Py

Sentinel Hub 659 Dec 23, 2022
An API built to format given addresses using Python and Flask.
An API built to format given addresses using Python and Flask.

An API built to format given addresses using Python and Flask. About The API returns properly formatted data, i.e. removing duplicate fields, distingu

null 1 Feb 27, 2022
This is a simple python code to get IP address and its location using python

IP address & Location finder @DEV/ED : Pavan Ananth Sharma Dependencies: ip2geotools Note: use pip install ip2geotools to install this in your termin

Pavan Ananth Sharma 2 Jul 5, 2022
A package built to support working with spatial data using open source python

EarthPy EarthPy makes it easier to plot and manipulate spatial data in Python. Why EarthPy? Python is a generic programming language designed to suppo

Earth Lab 414 Dec 23, 2022
Using SQLAlchemy with spatial databases

GeoAlchemy GIS Support for SQLAlchemy. Introduction GeoAlchemy is an extension of SQLAlchemy. It provides support for Geospatial data types at the ORM

null 109 Dec 1, 2022
Solving the Traveling Salesman Problem using Self-Organizing Maps
Solving the Traveling Salesman Problem using Self-Organizing Maps

Solving the Traveling Salesman Problem using Self-Organizing Maps This repository contains an implementation of a Self Organizing Map that can be used

Diego Vicente 3.1k Dec 31, 2022
Example of animated maps in matplotlib + geopandas using entire time series of congressional district maps from UCLA archive. rendered, interactive version below
Example of animated maps in matplotlib + geopandas using entire time series of congressional district maps from UCLA archive. rendered, interactive version below

Example of animated maps in matplotlib + geopandas using entire time series of congressional district maps from UCLA archive. rendered, interactive version below

Apoorva Lal 5 May 18, 2022
Hapi is a Python library for building Conceptual Distributed Model using HBV96 lumped model & Muskingum routing method
Hapi is a Python library for building Conceptual Distributed Model using HBV96 lumped model & Muskingum routing method

Current build status All platforms: Current release info Name Downloads Version Platforms Hapi - Hydrological library for Python Hapi is an open-sourc

Mostafa Farrag 15 Dec 26, 2022
Daily social mapping project in November 2021. Maps made using PyGMT whenever possible.
Daily social mapping project in November 2021. Maps made using PyGMT whenever possible.

Daily social mapping project in November 2021. Maps made using PyGMT whenever possible.

Wei Ji 20 Nov 24, 2022
Comments
  • the time to write a dask array in tif is too long?

    the time to write a dask array in tif is too long?

    I have a image which have 40000cols and 40000 rows ,while I use data = read_raster(filename, band=1), and the use witer_raster(out_filename, data), it need about one minutes, I want to know can it be quickly

    opened by DeZhao-Zhang 2
  • Add a Gitter chat badge to README.md

    Add a Gitter chat badge to README.md

    dymaxionlabs/dask-rasterio now has a Chat Room on Gitter

    @munshkr has just created a chat room. You can visit it here: https://gitter.im/dymaxionlabs/dask-rasterio.

    This pull-request adds this badge to your README.md:

    Gitter

    If my aim is a little off, please let me know.

    Happy chatting.

    PS: Click here if you would prefer not to receive automatic pull-requests from Gitter in future.

    opened by gitter-badger 1
  • Does dask-rasterio support masked array?

    Does dask-rasterio support masked array?

    I'm working with dask masked array, and was wondering what would be the translation of these lines?

        import rasterio
    with rasterio.open(inputFile) as source:
        # this is a 3D numpy array, with dimensions [band, row, col]
        src_array = source.read(masked=True)

    Thank you for your cool lib!

    opened by Becheler 0
  • TypeError: self._hds cannot be converted to a Python object for pickling

    TypeError: self._hds cannot be converted to a Python object for pickling

    Seems that rasterio's _hds object is no more serializable

    distributed.protocol.pickle - INFO - Failed to serialize ("('filled-2f9fe0560be0502eda038fa941309294', 0, 0)", <dask_rasterio.write.RasterioDataset object at 0x7f8f9deac828>, (slice(0, 748, None), slice(0, 22415, None)), <unlocked _thread.lock object at 0x7f8f9cb2af58>, False). Exception: self._hds cannot be converted to a Python object for pickling
---------------------------------------------------------------------------
TypeError                                 Traceback (most recent call last)
~/miniconda3/envs/jupyter/lib/python3.6/site-packages/distributed/protocol/pickle.py in dumps(x)
     37     try:
---> 38         result = pickle.dumps(x, protocol=pickle.HIGHEST_PROTOCOL)
     39         if len(result) < 1000:

~/miniconda3/envs/jupyter/lib/python3.6/site-packages/rasterio/_io.cpython-36m-x86_64-linux-gnu.so in rasterio._io.DatasetWriterBase.__reduce_cython__()

TypeError: self._hds cannot be converted to a Python object for pickling
    opened by arkanoid87 3
Releases(0.2.1)
Owner
Dymaxion Labs
Creating new value from geospatial imagery with deep learning
Dymaxion Labs
GitHub Repository
Processing and interpolating spatial data with a twist of machine learning

Documentation | Documentation (dev version) | Contact | Part of the Fatiando a Terra project About Verde is a Python library for processing spatial da

Fatiando a Terra 468 Dec 20, 2022
leafmap - A Python package for geospatial analysis and interactive mapping in a Jupyter environment.

A Python package for geospatial analysis and interactive mapping with minimal coding in a Jupyter environment

Qiusheng Wu 1.4k Jan 02, 2023
WhiteboxTools Python Frontend

whitebox-python Important Note This repository is related to the WhiteboxTools Python Frontend only. You can report issues to this repo if you have pr

Qiusheng Wu 304 Dec 15, 2022
A trivia questions about Europe

EUROPE TRIVIA QUIZ IN PYTHON Project Outline Ask user if he / she knows more about Europe. If yes show the Trivia main screen, else show the end Trivi

David Danso 1 Nov 17, 2021
Summary statistics of geospatial raster datasets based on vector geometries.

rasterstats rasterstats is a Python module for summarizing geospatial raster datasets based on vector geometries. It includes functions for zonal stat

Matthew Perry 437 Dec 23, 2022
Tile Map Service and OGC Tiles API for QGIS Server

Tiles API Add tiles API to QGIS Server Tiles Map Service API OGC Tiles API Tile Map Service API - TMS The TMS API provides these URLs: /tms/? to get i

3Liz 6 Dec 01, 2021
Location field and widget for Django. It supports Google Maps, OpenStreetMap and Mapbox

django-location-field Let users pick locations using a map widget and store its latitude and longitude. Stable version: django-location-field==2.1.0 D

Caio Ariede 481 Dec 29, 2022
geobeam - adds GIS capabilities to your Apache Beam and Dataflow pipelines.

geobeam adds GIS capabilities to your Apache Beam pipelines. What does geobeam do? geobeam enables you to ingest and analyze massive amounts of geospa

Google Cloud Platform 61 Nov 08, 2022
Python package for earth-observing satellite data processing

Satpy The Satpy package is a python library for reading and manipulating meteorological remote sensing data and writing it to various image and data f

PyTroll 882 Dec 27, 2022
Creates 3D geometries from 2D vector graphics, for use in geodynamic models

geomIO - creating 3D geometries from 2D input This is the Julia and Python version of geomIO, a free open source software to generate 3D volumes and s

3 Feb 01, 2022
Histogram matching plugin for rasterio

rio-hist Histogram matching plugin for rasterio. Provides a CLI and python module for adjusting colors based on histogram matching in a variety of col

Mapbox 75 Sep 23, 2022
LEOGPS - Satellite Navigation with GPS on Python!

LEOGPS is an open-source Python software which performs relative satellite navigation between two formation flying satellites, with the objective of high accuracy relative positioning. Specifically,

Samuel Low 50 Dec 13, 2022
WIP: extracting Geometry utilities from datacube-core

odc.geo This is still work in progress. This repository contains geometry related code extracted from Open Datacube. For details and motivation see OD

Open Data Cube 34 Jan 09, 2023
Manage your XYZ Hub or HERE Data Hub spaces from Python.

XYZ Spaces for Python Manage your XYZ Hub or HERE Data Hub spaces and Interactive Map Layer from Python. FEATURED IN: Online Python Machine Learning C

HERE Technologies 30 Oct 18, 2022
FDTD simulator that generates s-parameters from OFF geometry files using a GPU

Emport Overview This repo provides a FDTD (Finite Differences Time Domain) simulator called emport for solving RF circuits. Emport outputs its simulat

4 Dec 15, 2022
Raster processing benchmarks for Python and R packages

Raster processing benchmarks This repository contains a collection of raster processing benchmarks for Python and R packages. The tests cover the most

Krzysztof Dyba 13 Oct 24, 2022
Spectral decomposition for characterizing long-range interaction profiles in Hi-C maps

Inspectral Spectral decomposition for characterizing long-range interaction prof

Nezar Abdennur 6 Dec 13, 2022
GebPy is a Python-based, open source tool for the generation of geological data of minerals, rocks and complete lithological sequences.

GebPy is a Python-based, open source tool for the generation of geological data of minerals, rocks and complete lithological sequences. The data can be generated randomly or with respect to user-defi

Maximilian Beeskow 16 Nov 29, 2022
Replace MSFS2020's bing map to google map

English verison here 中文 免责声明 本教程提到的方法仅用于研究和学习用途。我不对使用、拓展该教程及方法所造成的任何法律责任和损失负责。 背景 微软模拟飞行2020的地景使用了Bing的卫星地图，然而卫星地图比较老旧，很多地区都是几年前的图设置直接是没有的。这种现象在全球不同地区

hesicong 272 Dec 24, 2022
Python 台灣行政區地圖 (2021)

Python 台灣行政區地圖 (2021) 以 python 讀取政府開放平台的 ShapeFile 地圖資訊。歡迎引用或是協作 另有縣市資訊、村里資訊與各種行政地圖資訊 例如： 直轄市、縣市界線(TWD97經緯度) 鄉鎮市區界線(TWD97經緯度) | 政府資料開放平臺: https://data

WeselyOng 12 Sep 27, 2022