Trio Assembly Snakemake Workflow

Overview

Trio Assembly Snakemake Workflow

Input

  • HiFi reads for child in bam format
  • Either HiFi or short reads for parents in either bam or cram format

Directory structure within basedir

.
├── cluster_logs
├── reads
│   ├── HG002
│   │   └── hifi
│   ├── HG003
│   │   ├── hifi
│   │   └── paired_end
│   ├── HG004
│   │   ├── hifi
│   │   └── paired_end
├── results
│   ├── HG002
│   │   ├── fasta
│   │   ├── hifiasm
│   │   ├── logs
│   │   └── yak
│   └── HG002_sr
│       ├── fasta
│       ├── hifiasm
│       ├── logs
│       └── yak
└── workflow_trio_assembly
    ├── calN50
    └── rules
        └── envs
Owner
Juniper A. Lake
Bioinformatics Scientist
Juniper A. Lake
2d war game single player

WarGame-third-version-0.0.4- 2d war game single player Hi ! Today, I publish on GitHub the version 0.0.4 of "WarGame". In this version, you can find a

Edouard Vincent 2 Apr 08, 2022
Krieg is a Python package for a general game framework.

Krieg Krieg is a Python package for a general game framework. It provides base classes for implementing simple games. Some example games are already i

Juho Kim 2 Jan 06, 2022
Tic tac toe game developed by naman in python

TIC TAC TOE GAME DEVELOPED BY NAMAN IN PYTHON . IT USES MINMAX ALGORITHM TO COMPETE IN DIFFICULTY MODE

Naman Anand 4 Jun 24, 2022
Hex-brawl-v25 - Simple Brawl Stars v25.107 server emulator written in Python

Hex Brawl Simple Brawl Stars v25.107 server emulator written in Python. Requirem

Shark01 3 Nov 24, 2022
Overview: copain, your friendly AI framework to learn and play games

Overview: copain, your friendly AI framework to learn and play games Interface fceux with python and run reinforcement learning. Compatibility Current

fcharras 1 Dec 16, 2021
Logo hitting the corner == best feeling ever!

Bouncing DVD logo - Pygame A little ride back to the 90s. Ah good ol' time! Didn't we all wait for the logo to hit the corners? Best feeling ever!! I

Hoang Nguyen 3 May 25, 2022
PyUnity is a Python implementation of the Unity Engine, written in C++

PyUnity is a Python implementation of the Unity Engine, written in C++. This is just a fun project and many features have been taken out to make it as easy as possible to create a scene and run it.

PyUnity 206 Jan 03, 2023
What games should I design next quarter?

Project1_Next-Quarter-Game-Design-Prediction What games should I design next quarter? 상황 : 게임회사 데이터팀 합류 문제 : '다음 분기에 어떤 게임을 설계해야할까' Data Description N

Jayden Lee(JaeHo Lee) 1 Jul 04, 2022
A fun discord bot for music, mini games, admin controls, economy, ai chatbot and levelling system

A fun discord bot for music, mini games, admin controls, economy, ai chatbot and levelling system. This bot was specially made for Dspark discord server.

2 Aug 30, 2022
A pygame implementation of John Conway's Game of Life

Game of Life A Pygame Simulation This is a Pygame implementation of the famous Conway's Game of Life. The game features a set of very simple rules: An

1 Jan 06, 2022
Allows you to email people wordle spoilers. Very beta, not as many features

wordlespoiler Allows you to email people wordle spoilers. Very beta, not as many features How to Use 1.) Make a new gmail account. Go to settings (Man

0 Jan 04, 2023
Made by Ashish and Avinash-sord12k. Powered by pygame

Spook_alle About -Made by Ashish (Github: Ashish-Github193) and Avinash-sord12k Version - BETA v_1.0 /1-11-2021/ (game is at its base version more ite

Ashish Kumar Jha 1 Nov 01, 2021
OpenGL experiments with Pygame & ModernGL

pygame-opengl OpenGL experiments with Pygame & ModernGL TODO Skybox & Reflections Post-process effects (motion blur, color correction, etc..) Normal m

Kadir Aksoy 4 Oct 28, 2022
A short non 100% Accurate Solar System in pygame

solar-system-pygame Controls UP/DOWN for Emulation Speed Control ESC for Pause/Unpause q to Quit c or ESC again to Continue LEFT CLICK to Add an orbit

LightCrimson 2 May 28, 2022
SpiderArcadeGame - A game where the player controls a little spider who is trying to protect herself from other invasive bugs

SpiderArcadeGame - A game where the player controls a little spider who is trying to protect herself from other invasive bugs

Matheus Farias de Oliveira Matsumoto 1 Mar 17, 2022
A converter for the .BMR / .RLE bitmap files used in some Neversoft PS1 games.

Requirements python3 pyqt5 - can be installed with pip install PyQt5 pypng - Included Usage Instructions This program can be running py main.py in the

4 Jul 30, 2022
A Snake Game built by Python Turtle Module 🐍

Snake-Game A Snake Game built with Python Turtle Module 🐍 Icons made by Freepik from www.flaticon.com Intro Control the direction of snake by simply

Megan 1 Oct 24, 2021
The zero player Darwinism simulation game as described by Conway (demonstrates Turing Completeness)

Conway's Game of Life The zero player Darwinism simulation game as described by Conway (demonstrates Turing Completeness). I created this script after

jachinema 1 Feb 13, 2022
An optimal solution finder for the game Wordle, written in Python

wordle-solver: a nearly-optimal computer player for Wordle Wordle is an interesting word guessing game. This program plays it very well, taking only 3

4 Jun 13, 2022
Solution for automation games play-to-earn

Pillow automation used processing images

Luis Eduardo Camilo 1 Jan 19, 2022