Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

Last update: Jan 23, 2022

Overview

codon_optimize_cds_with_many_taxids_singlefasta

Linux GUI app to codon optimize many single-fasta files with coding sequences, using many taxonomy ids

Depedences

linux OS (tested on ubuntu 20.04 LTS)
python 3.8.2 or later
anaconda or miniconda
Gooey conda install -c conda-forge gooey(if you get errors during installation or runtime try installing gtk sudo apt-get install libgtk-3-dev)
biopython pip install biopython
pandas pip install pandas
dnachisel pip install dnachisel

linux desktop app installation

open a linux text editor and edit in the python file the shebang line (to find where python is type in the terminal which python3)
convert to executable with chmod +x codon_optimize_cds_with_many_taxidS_singlefasta_gui.py
open a linux text editor and edit the PATHs in the .desktop file
move the file to /usr/share/applications
reboot your machine

Output

The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy ids of the organisms they are codon optimized for

A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI. Even For Admin Panel

Love-Calculator A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI, even For Adm

1 Mar 22, 2022

Pardus-flatpak-gui - A Flatpak GUI for Pardus

Pardus Flatpak GUI A GUI for Flatpak. You can run, install (from FlatHub and fro

2 Feb 17, 2022

Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.

What is Craxk ? Craxk is a UNIQUE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reprod

5 Jun 19, 2021

Linux Pressure Stall Information (PSI) Status App

Linux Pressure Stall Information (PSI) Status App psistat is a simple python3 program to display the PSIs and to capture/display exception events. psi

3 Sep 18, 2022

Explore related sequences in the OEIS

OEIS explorer This is a tool for exploring two different kinds of relationships between sequences in the OEIS: mentions (links) of other sequences on

6 Mar 15, 2022

Annotates sequences with Eggnog-mapper and hhblits against PDB70

Annotating "hypothetical" proteins with the PDB See config/ for configuration information. This workflow takes as input a set of protein sequences. It

1 Apr 5, 2022

Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a local folder

Ingestinator Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a

2 Nov 18, 2022

Tuple-sum-filter - Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo

Tuple Sum Filter A library to play with filtering numeric sequences by sums of t

1 Feb 16, 2022

This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.

BrightNetworkUK-GCC-2021 This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021. Language used here is py

28 May 23, 2022

Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

Related tags

Overview

codon_optimize_cds_with_many_taxids_singlefasta

Depedences

linux desktop app installation

Output

You might also like...

A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI. Even For Admin Panel

Pardus-flatpak-gui - A Flatpak GUI for Pardus

Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.

Linux Pressure Stall Information (PSI) Status App

Explore related sequences in the OEIS

Annotates sequences with Eggnog-mapper and hhblits against PDB70

Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a local folder

Tuple-sum-filter - Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo

This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.

Releases(v1.0)

v1.0(Jan 23, 2022)

Owner

Olga Tsiouri

Курс про техническое совершенство для нетехнарей

My repository for the Advent of Code, starting from 2021

Logo DYS (Doküman Yönetim Sitemi) API Python Implementation

Python Programmma DarkMap.py

Null safe support for Python

Mines all the moneys and stuff and things.

Pyjiting is a experimental Python-JIT compiler, which is the product of my undergraduate thesis

Design-by-contract in Python3 with informative violation messages and inheritance

This repository contains Python games that I've worked on. You'll learn how to create python games with AI. I try to focus on creating board games without GUI in Jupyter-notebook.

Blender Light Manipulation - A script that makes it easier to work with light

京东自动入会获取京豆

This repository requires you to solve a problem by writing some basic python code.

The third home of the bare Programming Language (1st there's my heart, the forest came second and then there's Github :)

Camera track the tip of a pen to use as a drawing tablet

Nag0mi ctf problem 2021 writeup

Telegram bot to upload media to telegra.ph

a url shortener with fastapi and tortoise-orm

Swim between bookmarks in the Windows terminal

Cross-Encoder-with-Bi-Encoder를 활용한 WebPage 데모

A program that makes all 47 textures of Optifine CTM only using 2 textures