Linux GUI app to codon optimize many single-fasta files with coding sequences , using many taxonomy ids

Related tags

Miscellaneouscodon_optimize_cds_with_many_taxids_singlefasta
Overview

codon_optimize_cds_with_many_taxids_singlefasta DOI

Linux GUI app to codon optimize many single-fasta files with coding sequences, using many taxonomy ids

Depedences

  1. linux OS (tested on ubuntu 20.04 LTS)
  2. python 3.8.2 or later
  3. anaconda or miniconda
  4. Gooey conda install -c conda-forge gooey(if you get errors during installation or runtime try installing gtk sudo apt-get install libgtk-3-dev)
  5. biopython pip install biopython
  6. pandas pip install pandas
  7. dnachisel pip install dnachisel

linux desktop app installation

  1. open a linux text editor and edit in the python file the shebang line (to find where python is type in the terminal which python3)
  2. convert to executable with chmod +x codon_optimize_cds_with_many_taxidS_singlefasta_gui.py
  3. open a linux text editor and edit the PATHs in the .desktop file
  4. move the file to /usr/share/applications
  5. reboot your machine

Output

The output single-fasta files will have the same prefix as the input ones and as suffix the taxonomy ids of the organisms they are codon optimized for

You might also like...
A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI. Even For Admin Panel

Love-Calculator A GUI love Calculator which saves all the User Data in text file(sql based script will be uploaded soon). Interative GUI, even For Adm

Adithya Krishnan 1 Mar 22, 2022
Pardus-flatpak-gui - A Flatpak GUI for Pardus
Pardus-flatpak-gui - A Flatpak GUI for Pardus

Pardus Flatpak GUI A GUI for Flatpak. You can run, install (from FlatHub and fro

Erdem Ersoy 2 Feb 17, 2022
Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.
Craxk is a SINGLE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reproduced by a single machine.

What is Craxk ? Craxk is a UNIQUE AND NON-REPLICABLE Hash that uses data from the hardware where it is executed to form a hash that can only be reprod

null 5 Jun 19, 2021
Linux Pressure Stall Information (PSI) Status App
Linux Pressure Stall Information (PSI) Status App

Linux Pressure Stall Information (PSI) Status App psistat is a simple python3 program to display the PSIs and to capture/display exception events. psi

Joe D 3 Sep 18, 2022
Explore related sequences in the OEIS

OEIS explorer This is a tool for exploring two different kinds of relationships between sequences in the OEIS: mentions (links) of other sequences on

Alex Hall 6 Mar 15, 2022
Annotates sequences with Eggnog-mapper and hhblits against PDB70

Annotating "hypothetical" proteins with the PDB See config/ for configuration information. This workflow takes as input a set of protein sequences. It

null 1 Apr 5, 2022
Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a local folder

Ingestinator Ingestinator is my personal VFX pipeline tool for ingesting folders containing frame sequences that have been pulled and downloaded to a

Henry Wilkinson 2 Nov 18, 2022
Tuple-sum-filter - Library to play with filtering numeric sequences by sums of their pairs, triplets, etc. With a bonus CLI demo

Tuple Sum Filter A library to play with filtering numeric sequences by sums of t

Laurence Billingham 1 Feb 16, 2022
This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.
This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021.

BrightNetworkUK-GCC-2021 This repo is related to Google Coding Challenge, given to Bright Network Internship Experience 2021. Language used here is py

Dareer Ahmad Mufti 28 May 23, 2022
Releases(v1.0)
Owner
Olga Tsiouri
Biochemist & Biotechnologist. PhD candidate at @plant_env, @uth.gr #bioinformatics, plant-fungal omics
Olga Tsiouri
GitHub Repository
Created a Python Keylogger script.

Python Script Simple Keylogger Script WHAT IS IT? Created a Python Keylogger script. HOW IT WORKS Once the script has been executed, it will automatic

AC 0 Dec 12, 2021
A Klipper plugin for accurate Z homing

Stable Z Homing for Klipper A Klipper plugin for accurate Z homing This plugin provides a new G-code command, STABLE_Z_HOME, which homes Z repeatedly

Matthew Lloyd 24 Dec 28, 2022
Linux Pressure Stall Information (PSI) Status App

Linux Pressure Stall Information (PSI) Status App psistat is a simple python3 program to display the PSIs and to capture/display exception events. psi

Joe D 3 Sep 18, 2022
A parser of Windows Defender's DetectionHistory forensic artifact, containing substantial info about quarantined files and executables.

A parser of Windows Defender's DetectionHistory forensic artifact, containing substantial info about quarantined files and executables.

Jordan Klepser 101 Oct 30, 2022
This is a program for Carbon Emission calculator.

Summary This is a program for Carbon Emission calculator. Usage This will calculate the carbon emission by each person on various factors. Contributor

Ankit Rane 2 Feb 18, 2022
Automatically find solutions when your Python code encounters an issue.

What The Python?! Helping you find answers to the errors Python spits out. Installation You can find the source code on GitHub at: https://github.com/

What The Python?! 139 Dec 14, 2022
This is a spamming selfbot that has custom spammed message and @everyone spam.

This is a spamming selfbot that has custom spammed message and @everyone spam.

astro1212 1 Jul 31, 2022
A free website that keeps the people informed about housing and evictions.

Eviction Tracker Currently helping verify detainer warrant data for middle Tennessee - via Middle TN DSA - Red Door Collective Features Presents data

Red Door Collective 7 Dec 14, 2022
Sabe is a python framework written for easy web server setup.

Sabe is a python framework written for easy web server setup. Sabe, kolay web sunucusu kurulumu için yazılmış bir python çerçevesidir. Öğrenmesi kola

2 Jan 01, 2022
Wisdom Tree is a concentration app i am working on.

Wisdom Tree Wisdom Tree is a tui concentration app I am working on. Inspired by the wisdom tree in Plants vs. Zombies which gives in-game tips when it

NO ONE 241 Jan 01, 2023
A Regex based linter tool that works for any language and works exclusively with custom linting rules.

renag Documentation Available Here Short for Regex (re) Nag (like "one who complains"). Now also PEGs (Parsing Expression Grammars) compatible with py

Ryan Peach 12 Oct 20, 2022
Google Scholar App Using Python

Google Scholar App Watch the tutorial video How to build a Google Scholar App | Streamlit #30 Demo Launch the web app: Reproducing this web app To rec

Chanin Nantasenamat 4 Jun 05, 2022
Expense Tracker is a very good tool to keep track of your expenseditures and the total money you saved.

Expense Tracker is a very good tool to keep track of your expenseditures and the total money you saved.

Shreejan Dolai 9 Dec 31, 2022
Exam assignment for Laboratory of Bioinformatics 2

Exam assignment for Laboratory of Bioinformatics 2 (Alma Mater University of Bologna, Master in Bioinformatics)

2 Oct 22, 2022
Repls goes to sleep due to inactivity, but to keep it awake, simply host a webserver and ping it.

Repls goes to sleep due to inactivity, but to keep it awake, simply host a webserver and ping it. This repo will help you make a webserver with a bit of console controls.

2 Mar 01, 2022
This python application let you check for new announcements from MMLS, take attendance while your lecturer is sharing QR Code on the screen.

This python application let you check for new announcements from MMLS, take attendance while your lecturer is sharing QR Code on the screen.

wyhong3103 5 Jul 17, 2022
This is a Python package named - calculator

Calculator Python Package This is a Calculator Package of Python. How To Install The Package? Install calchundred with pip (Package Installer Of Pytho

Arinjoy_Programmer 1 Nov 21, 2021
Magenta: Music and Art Generation with Machine Intelligence

Magenta is a research project exploring the role of machine learning in the process of creating art and music. Primarily this involves developing new

Magenta 18.1k Jan 05, 2023
Python library for the analysis of dynamic measurements

Python library for the analysis of dynamic measurements The goal of this library is to provide a starting point for users in metrology and related are

Physikalisch-Technische Bundesanstalt - Department 9.4 'Metrology for the digital Transformation' 18 Dec 21, 2022
GUI for the Gammu library.

Wammu GUI for the Gammu library. Homepage https://wammu.eu/ License GNU GPL version 3 or later. First start On first start you will be asked for set

Gammu 60 Dec 14, 2022