End-to-end machine learning project for rices detection

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Deep Learningbasmatinet
Overview

Basmatinet

Welcome to this project folks !

Whether you like it or not this project is all about riiiiice or riz in french. It is also about Deep Learning and MLOPS. So if you want to learn to train and deploy a simple model to recognize rice type basing on a photo, then you are at the right place.

0- Project's Roadmap

This project will consist to:

  • Train a Deep Learning model with Pytorch.
  • Transfert learning from Efficient Net.
  • Data augmentation with Albumentation.
  • Save trained model with early stopping.
  • Track the training with MLFLOW.
  • Serve the model with a Rest Api built with Flask.
  • Encode data in base64 client side before sending to the api server.
  • Package the application in microservice's fashion with Docker.
  • Yaml for configurations file.
  • Passing arguments anywhere it is possible.
  • Orchestrate the prediction service with Kubernetes (k8s) on Google Cloud Platform.
  • Pre-commit git hook.
  • Logging during training.
  • CI with github actions.
  • CD with terraform to build environment on Google Cloud Platform.
  • Save images and predictions in InfluxDB database.
  • Create K8s service endpoint for external InfluxDB database.
  • Create K8s secret for external InfluxDB database.
  • Unitary tests with Pytest (Fixtures and Mocks).

1- Install project's dependencies and packages

This project was developped in conda environment but you can use any python virtual environment but you should have installed some packages that are in basmatinet/requirements.txt

Python version: 3.8.12

# Move into the project root
$ cd basmatinet

# 1st alternative: using pip
$ pip install -r requirements.txt
# 2nd alternative
$ conda install --file requirements.txt

2- Train a basmatinet model

$ python src/train.py "/path/to/rice_image_dataset/" \
                     --batch-size 16 --nb-epochs 200 \
                     --workers 8 --early-stopping 5  \
                     --percentage 0.1 --cuda

3- Dockerize the model and push the Docker Image to Google Container Registry

1st step: Let's build a docker images

# Move into the app directory
$ cd basmatinet/app

# Build the machine learning serving app image
$ docker build -t basmatinet .

# Run a model serving app container outside of kubernetes (optionnal)
$ docker run -d -p 5000:5000 basmatinet

# Try an inference to test the endpoint
$ python frontend.py --filename "../images/arborio.jpg" --host-ip "0.0.0.0"

2nd step: Let's push the docker image into a Google Container Registry. But you should create a google cloud project to have PROJECT-ID and in this case you HOSTNAME will be "gcr.io" and you should enable GCR Api on google cloud platform.

# Re-tag the image and include the container in the image tag
$ docker tag basmatinet [HOSTNAME]/[PROJECT-ID]/basmatinet

# Push to container registry
$ docker push [HOSTNAME]/[PROJECT-ID]/basmatinet

4- Create a kubernetes cluster

First of all you should enable GKE Api on google cloud platform. And go to the cloud shell or stay on your host if you have gcloud binary already installed.

# Start a cluster
$ gcloud container clusters create k8s-gke-cluster --num-nodes 3 --machine-type g1-small --zone europe-west1-b

# Connect to the cluster
$ gcloud container clusters get-credentials k8s-gke-cluster --zone us-west1-b --project [PROJECT_ID]

4- Deploy the application on Kubernetes (Google Kubernetes Engine)

Create the deployement and the service on a kubernetes cluster.

# In the app directory
$ cd basmatinet/app
# Create the namespace
$ kubectl apply -f k8s/namespace.yaml
# Create the deployment
$ kubectl apply -f k8s/basmatinet-deployment.yaml --namespace=mlops-test
# Create the service
$ kubectl apply -f k8s/basmatinet-service.yaml --namespace=mlops-test

# Check that everything is alright with the following command and look for basmatinet-app in the output
$ kubectl get services

# The output should look like
NAME             TYPE           CLUSTER-IP    EXTERNAL-IP     PORT(S)          AGE
basmatinet-app   LoadBalancer   xx.xx.xx.xx   xx.xx.xx.xx   5000:xxxx/TCP      2m3s

Take the EXTERNAL-IP and test your service with the file basmatinet/app/frontend.py . Then you can cook your jollof with some basmatinet!!!

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Releases(v0.2.0)

  • v0.2.0(May 26, 2022)

    We add image building annd pushing to Google Container Registry. Moreover we add a last step to deploy on a Google Kubernetes Engine cluster. And this the first official release.

    Source code(tar.gz)
    Source code(zip)

  • v0.1.0(May 24, 2022)

Owner
Béranger
Machine Learning Engineer with high interest for Africa.
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