Apache Liminal is an end-to-end platform for data engineers & scientists, allowing them to build, train and deploy machine learning models in a robust and agile way

Overview

Apache Liminal

Apache Liminal is an end-to-end platform for data engineers & scientists, allowing them to build, train and deploy machine learning models in a robust and agile way.

The platform provides the abstractions and declarative capabilities for data extraction & feature engineering followed by model training and serving. Liminal's goal is to operationalize the machine learning process, allowing data scientists to quickly transition from a successful experiment to an automated pipeline of model training, validation, deployment and inference in production, freeing them from engineering and non-functional tasks, and allowing them to focus on machine learning code and artifacts.

Basics

Using simple YAML configuration, create your own schedule data pipelines (a sequence of tasks to perform), application servers, and more.

Getting Started

A simple getting stated guide for Liminal can be found here

Apache Liminal Documentation

Full documentation of Apache Liminal can be found here

High Level Architecture

High level architecture documentation can be found here

Example YAML config file

---
name: MyLiminalStack
owner: Bosco Albert Baracus
volumes:
  - volume: myvol1
    local:
      path: /Users/me/myvol1
pipelines:
  - pipeline: my_pipeline
    start_date: 1970-01-01
    timeout_minutes: 45
    schedule: 0 * 1 * *
    metrics:
      namespace: TestNamespace
      backends: [ 'cloudwatch' ]
    tasks:
      - task: my_python_task
        type: python
        description: static input task
        image: my_python_task_img
        source: write_inputs
        env_vars:
          NUM_FILES: 10
          NUM_SPLITS: 3
        mounts:
          - mount: mymount
            volume: myvol1
            path: /mnt/vol1
        cmd: python -u write_inputs.py
      - task: my_parallelized_python_task
        type: python
        description: parallelized python task
        image: my_parallelized_python_task_img
        source: write_outputs
        env_vars:
          FOO: BAR
        executors: 3
        mounts:
          - mount: mymount
            volume: myvol1
            path: /mnt/vol1
        cmd: python -u write_inputs.py
services:
  - service:
    name: my_python_server
    type: python_server
    description: my python server
    image: my_server_image
    source: myserver
    endpoints:
      - endpoint: /myendpoint1
        module: my_server
        function: myendpoint1func

Installation

  1. Install this repository (HEAD)
   pip install git+https://github.com/apache/incubator-liminal.git
  1. Optional: set LIMINAL_HOME to path of your choice (if not set, will default to ~/liminal_home)
echo 'export LIMINAL_HOME=' >> ~/.bash_profile && source ~/.bash_profile

Authoring pipelines

This involves at minimum creating a single file called liminal.yml as in the example above.

If your pipeline requires custom python code to implement tasks, they should be organized like this

If your pipeline introduces imports of external packages which are not already a part of the liminal framework (i.e. you had to pip install them yourself), you need to also provide a requirements.txt in the root of your project.

Testing the pipeline locally

When your pipeline code is ready, you can test it by running it locally on your machine.

  1. Ensure you have The Docker engine running locally, and enable a local Kubernetes cluster: Kubernetes configured

And allocate it at least 3 CPUs (under "Resources" in the Docker preference UI).

If you want to execute your pipeline on a remote kubernetes cluster, make sure the cluster is configured using :

kubectl config set-context <your remote kubernetes cluster>
  1. Build the docker images used by your pipeline.

In the example pipeline above, you can see that tasks and services have an "image" field - such as "my_static_input_task_image". This means that the task is executed inside a docker container, and the docker container is created from a docker image where various code and libraries are installed.

You can take a look at what the build process looks like, e.g. here

In order for the images to be available for your pipeline, you'll need to build them locally:

cd </path/to/your/liminal/code>
liminal build

You'll see that a number of outputs indicating various docker images built.

  1. Create a kubernetes local volume
    In case your Yaml includes working with volumes please first run the following command:
cd </path/to/your/liminal/code> 
liminal create
  1. Deploy the pipeline:
cd </path/to/your/liminal/code> 
liminal deploy

Note: after upgrading liminal, it's recommended to issue the command

liminal deploy --clean

This will rebuild the airlfow docker containers from scratch with a fresh version of liminal, ensuring consistency.

  1. Start the server
liminal start
  1. Stop the server
liminal stop
  1. Display the server logs
liminal logs --follow/--tail

Number of lines to show from the end of the log:
liminal logs --tail=10

Follow log output:
liminal logs --follow
  1. Navigate to http://localhost:8080/admin

  2. You should see your pipeline The pipeline is scheduled to run according to the json schedule: 0 * 1 * * field in the .yml file you provided.

  3. To manually activate your pipeline: Click your pipeline and then click "trigger DAG" Click "Graph view" You should see the steps in your pipeline getting executed in "real time" by clicking "Refresh" periodically.

Pipeline activation

Contributing

More information on contributing can be found here

Running Tests (for contributors)

When doing local development and running Liminal unit-tests, make sure to set LIMINAL_STAND_ALONE_MODE=True

Owner
The Apache Software Foundation
The Apache Software Foundation
ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more

ml4h is a toolkit for machine learning on clinical data of all kinds including genetics, labs, imaging, clinical notes, and more

Broad Institute 65 Dec 20, 2022
Predico Disease Prediction system based on symptoms provided by patient- using Python-Django & Machine Learning

Predico Disease Prediction system based on symptoms provided by patient- using Python-Django & Machine Learning

Felix Daudi 1 Jan 06, 2022
This is an auto-ML tool specialized in detecting of outliers

Auto-ML tool specialized in detecting of outliers Description This tool will allows you, with a Dash visualization, to compare 10 models of machine le

1 Nov 03, 2021
Arquivos do curso online sobre a estatística voltada para ciência de dados e aprendizado de máquina.

Estatistica para Ciência de Dados e Machine Learning Arquivos do curso online sobre a estatística voltada para ciência de dados e aprendizado de máqui

Renan Barbosa 1 Jan 10, 2022
Forecast dynamically at scale with this unique package. pip install scalecast

🌄 Scalecast: Dynamic Forecasting at Scale About This package uses a scaleable forecasting approach in Python with common scikit-learn and statsmodels

Michael Keith 158 Jan 03, 2023
A simple machine learning python sign language detection project.

SST Coursework 2022 About the app A python application that utilises the tensorflow object detection algorithm to achieve automatic detection of ameri

Xavier Koh 2 Jun 30, 2022
A naive Bayes model for cancer classification using a set of documents

Naivebayes text classifcation model for cancer and noncancer documents Author: Alex King Purpose Requirements/files included How to use 1. Purpose The

Alex W King 1 Nov 24, 2021
Machine-learning-dell - Repositório com as atividades desenvolvidas no curso de Machine Learning

📚 Descrição Neste curso da Dell aprofundamos nossos conhecimentos em Machine Learning. 🖥️ Aulas (Em curso) 1.1 - Python aplicado a Data Science 1.2

Claudia dos Anjos 1 Jan 05, 2022
Microsoft 5.6k Jan 07, 2023
Turns your machine learning code into microservices with web API, interactive GUI, and more.

Turns your machine learning code into microservices with web API, interactive GUI, and more.

Machine Learning Tooling 2.8k Jan 02, 2023
As we all know the BGMI Loot Crate comes with so many resources for the gamers, this ML Crate will be the hub of various ML projects which will be the resources for the ML enthusiasts! Open Source Program: SWOC 2021 and JWOC 2022.

Machine Learning Loot Crate 💻 🧰 🔴 Welcome contributors! As we all know the BGMI Loot Crate comes with so many resources for the gamers, this ML Cra

Abhishek Sharma 89 Dec 28, 2022
The code from the Machine Learning Bookcamp book and a free course based on the book

The code from the Machine Learning Bookcamp book and a free course based on the book

Alexey Grigorev 5.5k Jan 09, 2023
MosaicML Composer contains a library of methods, and ways to compose them together for more efficient ML training

MosaicML Composer MosaicML Composer contains a library of methods, and ways to compose them together for more efficient ML training. We aim to ease th

MosaicML 2.8k Jan 06, 2023
Responsible Machine Learning with Python

Examples of techniques for training interpretable ML models, explaining ML models, and debugging ML models for accuracy, discrimination, and security.

ph_ 624 Jan 06, 2023
Machine Learning Model to predict the payment date of an invoice when it gets created in the system.

Payment-Date-Prediction Machine Learning Model to predict the payment date of an invoice when it gets created in the system.

15 Sep 09, 2022
Model factory is a ML training platform to help engineers to build ML models at scale

Model Factory Machine learning today is powering many businesses today, e.g., search engine, e-commerce, news or feed recommendation. Training high qu

16 Sep 23, 2022
Bayesian optimization in JAX

Bayesian optimization in JAX

Predictive Intelligence Lab 26 May 11, 2022
Drug prediction

I have collected data about a set of patients, all of whom suffered from the same illness. During their course of treatment, each patient responded to one of 5 medications, Drug A, Drug B, Drug c, Dr

Khazar 1 Jan 28, 2022
Short PhD seminar on Machine Learning Security (Adversarial Machine Learning)

Short PhD seminar on Machine Learning Security (Adversarial Machine Learning)

141 Dec 27, 2022
Book Item Based Collaborative Filtering

Book-Item-Based-Collaborative-Filtering Collaborative filtering methods are used

Şebnem 3 Jan 06, 2022