Apache Liminal is an end-to-end platform for data engineers & scientists, allowing them to build, train and deploy machine learning models in a robust and agile way

Overview

Apache Liminal

Apache Liminal is an end-to-end platform for data engineers & scientists, allowing them to build, train and deploy machine learning models in a robust and agile way.

The platform provides the abstractions and declarative capabilities for data extraction & feature engineering followed by model training and serving. Liminal's goal is to operationalize the machine learning process, allowing data scientists to quickly transition from a successful experiment to an automated pipeline of model training, validation, deployment and inference in production, freeing them from engineering and non-functional tasks, and allowing them to focus on machine learning code and artifacts.

Basics

Using simple YAML configuration, create your own schedule data pipelines (a sequence of tasks to perform), application servers, and more.

Getting Started

A simple getting stated guide for Liminal can be found here

Apache Liminal Documentation

Full documentation of Apache Liminal can be found here

High Level Architecture

High level architecture documentation can be found here

Example YAML config file

---
name: MyLiminalStack
owner: Bosco Albert Baracus
volumes:
  - volume: myvol1
    local:
      path: /Users/me/myvol1
pipelines:
  - pipeline: my_pipeline
    start_date: 1970-01-01
    timeout_minutes: 45
    schedule: 0 * 1 * *
    metrics:
      namespace: TestNamespace
      backends: [ 'cloudwatch' ]
    tasks:
      - task: my_python_task
        type: python
        description: static input task
        image: my_python_task_img
        source: write_inputs
        env_vars:
          NUM_FILES: 10
          NUM_SPLITS: 3
        mounts:
          - mount: mymount
            volume: myvol1
            path: /mnt/vol1
        cmd: python -u write_inputs.py
      - task: my_parallelized_python_task
        type: python
        description: parallelized python task
        image: my_parallelized_python_task_img
        source: write_outputs
        env_vars:
          FOO: BAR
        executors: 3
        mounts:
          - mount: mymount
            volume: myvol1
            path: /mnt/vol1
        cmd: python -u write_inputs.py
services:
  - service:
    name: my_python_server
    type: python_server
    description: my python server
    image: my_server_image
    source: myserver
    endpoints:
      - endpoint: /myendpoint1
        module: my_server
        function: myendpoint1func

Installation

  1. Install this repository (HEAD)
   pip install git+https://github.com/apache/incubator-liminal.git
  1. Optional: set LIMINAL_HOME to path of your choice (if not set, will default to ~/liminal_home)
echo 'export LIMINAL_HOME=' >> ~/.bash_profile && source ~/.bash_profile

Authoring pipelines

This involves at minimum creating a single file called liminal.yml as in the example above.

If your pipeline requires custom python code to implement tasks, they should be organized like this

If your pipeline introduces imports of external packages which are not already a part of the liminal framework (i.e. you had to pip install them yourself), you need to also provide a requirements.txt in the root of your project.

Testing the pipeline locally

When your pipeline code is ready, you can test it by running it locally on your machine.

  1. Ensure you have The Docker engine running locally, and enable a local Kubernetes cluster: Kubernetes configured

And allocate it at least 3 CPUs (under "Resources" in the Docker preference UI).

If you want to execute your pipeline on a remote kubernetes cluster, make sure the cluster is configured using :

kubectl config set-context <your remote kubernetes cluster>
  1. Build the docker images used by your pipeline.

In the example pipeline above, you can see that tasks and services have an "image" field - such as "my_static_input_task_image". This means that the task is executed inside a docker container, and the docker container is created from a docker image where various code and libraries are installed.

You can take a look at what the build process looks like, e.g. here

In order for the images to be available for your pipeline, you'll need to build them locally:

cd </path/to/your/liminal/code>
liminal build

You'll see that a number of outputs indicating various docker images built.

  1. Create a kubernetes local volume
    In case your Yaml includes working with volumes please first run the following command:
cd </path/to/your/liminal/code> 
liminal create
  1. Deploy the pipeline:
cd </path/to/your/liminal/code> 
liminal deploy

Note: after upgrading liminal, it's recommended to issue the command

liminal deploy --clean

This will rebuild the airlfow docker containers from scratch with a fresh version of liminal, ensuring consistency.

  1. Start the server
liminal start
  1. Stop the server
liminal stop
  1. Display the server logs
liminal logs --follow/--tail

Number of lines to show from the end of the log:
liminal logs --tail=10

Follow log output:
liminal logs --follow
  1. Navigate to http://localhost:8080/admin

  2. You should see your pipeline The pipeline is scheduled to run according to the json schedule: 0 * 1 * * field in the .yml file you provided.

  3. To manually activate your pipeline: Click your pipeline and then click "trigger DAG" Click "Graph view" You should see the steps in your pipeline getting executed in "real time" by clicking "Refresh" periodically.

Pipeline activation

Contributing

More information on contributing can be found here

Running Tests (for contributors)

When doing local development and running Liminal unit-tests, make sure to set LIMINAL_STAND_ALONE_MODE=True

Owner
The Apache Software Foundation
The Apache Software Foundation
Mortality risk prediction for COVID-19 patients using XGBoost models

Mortality risk prediction for COVID-19 patients using XGBoost models Using demographic and lab test data received from the HM Hospitales in Spain, I b

1 Jan 19, 2022
Add built-in support for quaternions to numpy

Quaternions in numpy This Python module adds a quaternion dtype to NumPy. The code was originally based on code by Martin Ling (which he wrote with he

Mike Boyle 531 Dec 28, 2022
This is a Machine Learning model which predicts the presence of Diabetes in Patients

Diabetes Disease Prediction This is a machine Learning mode which tries to determine if a person has a diabetes or not. Data The dataset is in comma s

Edem Gold 4 Mar 16, 2022
Implementation of different ML Algorithms from scratch, written in Python 3.x

Implementation of different ML Algorithms from scratch, written in Python 3.x

Gautam J 393 Nov 29, 2022
We have a dataset of user performances. The project is to develop a machine learning model that will predict the salaries of baseball players.

Salary-Prediction-with-Machine-Learning 1. Business Problem Can a machine learning project be implemented to estimate the salaries of baseball players

Ayşe Nur Türkaslan 9 Oct 14, 2022
Python based GBDT implementation

Py-boost: a research tool for exploring GBDTs Modern gradient boosting toolkits are very complex and are written in low-level programming languages. A

Sberbank AI Lab 20 Sep 21, 2022
Machine-Learning with python (jupyter)

Machine-Learning with python (jupyter) 머신러닝 야학 작심 10일과 쥬피터 노트북 기반 데이터 사이언스 시작 들어가기전 https://nbviewer.org/ 페이지를 통해서 쥬피터 노트북 내용을 볼 수 있다. 위 페이지에서 현재 레포 기

HyeonWoo Jeong 1 Jan 23, 2022
fMRIprep Pipeline To Machine Learning

fMRIprep Pipeline To Machine Learning(Demo) 所有配置均在config.py文件下定义 前置环境(lilab) 各个节点均安装docker,并有fmripre的镜像 可以使用conda中的base环境(相应的第三份包之后更新) 1. fmriprep scr

Alien 3 Mar 08, 2022
Tutorials, examples, collections, and everything else that falls into the categories: pattern classification, machine learning, and data mining

**Tutorials, examples, collections, and everything else that falls into the categories: pattern classification, machine learning, and data mining.** S

Sebastian Raschka 4k Dec 30, 2022
EbookMLCB - ebook Machine Learning cơ bản

Mã nguồn cuốn ebook "Machine Learning cơ bản", Vũ Hữu Tiệp. ebook Machine Learning cơ bản pdf-black_white, pdf-color. Mọi hình thức sao chép, in ấn đề

943 Jan 02, 2023
Book Recommender System Using Sci-kit learn N-neighbours

Model-Based-Recommender-Engine I created a book Recommender System using Sci-kit learn's N-neighbours algorithm for my model and the streamlit library

1 Jan 13, 2022
Microsoft Machine Learning for Apache Spark

Microsoft Machine Learning for Apache Spark MMLSpark is an ecosystem of tools aimed towards expanding the distributed computing framework Apache Spark

Microsoft Azure 3.9k Dec 30, 2022
All-in-one web-based development environment for machine learning

All-in-one web-based development environment for machine learning Getting Started • Features & Screenshots • Support • Report a Bug • FAQ • Known Issu

3 Feb 03, 2021
Uber Open Source 1.6k Dec 31, 2022
Code for the TCAV ML interpretability project

Interpretability Beyond Feature Attribution: Quantitative Testing with Concept Activation Vectors (TCAV) Been Kim, Martin Wattenberg, Justin Gilmer, C

552 Dec 27, 2022
Open-Source CI/CD platform for ML teams. Deliver ML products, better & faster. ⚡️🧑‍🔧

Deliver ML products, better & faster Giskard is an Open-Source CI/CD platform for ML teams. Inspect ML models visually from your Python notebook 📗 Re

Giskard 335 Jan 04, 2023
Responsible Machine Learning with Python

Examples of techniques for training interpretable ML models, explaining ML models, and debugging ML models for accuracy, discrimination, and security.

ph_ 624 Jan 06, 2023
Bottleneck a collection of fast, NaN-aware NumPy array functions written in C.

Bottleneck Bottleneck is a collection of fast, NaN-aware NumPy array functions written in C. As one example, to check if a np.array has any NaNs using

Python for Data 835 Dec 27, 2022
Simple Machine Learning Tool Kit

Getting started smltk (Simple Machine Learning Tool Kit) package is implemented for helping your work during data preparation testing your model The g

Alessandra Bilardi 1 Dec 30, 2021
Kaggler is a Python package for lightweight online machine learning algorithms and utility functions for ETL and data analysis.

Kaggler is a Python package for lightweight online machine learning algorithms and utility functions for ETL and data analysis. It is distributed under the MIT License.

Jeong-Yoon Lee 720 Dec 25, 2022