Apache Liminal is an end-to-end platform for data engineers & scientists, allowing them to build, train and deploy machine learning models in a robust and agile way

Overview

Apache Liminal

Apache Liminal is an end-to-end platform for data engineers & scientists, allowing them to build, train and deploy machine learning models in a robust and agile way.

The platform provides the abstractions and declarative capabilities for data extraction & feature engineering followed by model training and serving. Liminal's goal is to operationalize the machine learning process, allowing data scientists to quickly transition from a successful experiment to an automated pipeline of model training, validation, deployment and inference in production, freeing them from engineering and non-functional tasks, and allowing them to focus on machine learning code and artifacts.

Basics

Using simple YAML configuration, create your own schedule data pipelines (a sequence of tasks to perform), application servers, and more.

Getting Started

A simple getting stated guide for Liminal can be found here

Apache Liminal Documentation

Full documentation of Apache Liminal can be found here

High Level Architecture

High level architecture documentation can be found here

Example YAML config file

---
name: MyLiminalStack
owner: Bosco Albert Baracus
volumes:
  - volume: myvol1
    local:
      path: /Users/me/myvol1
pipelines:
  - pipeline: my_pipeline
    start_date: 1970-01-01
    timeout_minutes: 45
    schedule: 0 * 1 * *
    metrics:
      namespace: TestNamespace
      backends: [ 'cloudwatch' ]
    tasks:
      - task: my_python_task
        type: python
        description: static input task
        image: my_python_task_img
        source: write_inputs
        env_vars:
          NUM_FILES: 10
          NUM_SPLITS: 3
        mounts:
          - mount: mymount
            volume: myvol1
            path: /mnt/vol1
        cmd: python -u write_inputs.py
      - task: my_parallelized_python_task
        type: python
        description: parallelized python task
        image: my_parallelized_python_task_img
        source: write_outputs
        env_vars:
          FOO: BAR
        executors: 3
        mounts:
          - mount: mymount
            volume: myvol1
            path: /mnt/vol1
        cmd: python -u write_inputs.py
services:
  - service:
    name: my_python_server
    type: python_server
    description: my python server
    image: my_server_image
    source: myserver
    endpoints:
      - endpoint: /myendpoint1
        module: my_server
        function: myendpoint1func

Installation

  1. Install this repository (HEAD)
   pip install git+https://github.com/apache/incubator-liminal.git
  1. Optional: set LIMINAL_HOME to path of your choice (if not set, will default to ~/liminal_home)
echo 'export LIMINAL_HOME=' >> ~/.bash_profile && source ~/.bash_profile

Authoring pipelines

This involves at minimum creating a single file called liminal.yml as in the example above.

If your pipeline requires custom python code to implement tasks, they should be organized like this

If your pipeline introduces imports of external packages which are not already a part of the liminal framework (i.e. you had to pip install them yourself), you need to also provide a requirements.txt in the root of your project.

Testing the pipeline locally

When your pipeline code is ready, you can test it by running it locally on your machine.

  1. Ensure you have The Docker engine running locally, and enable a local Kubernetes cluster: Kubernetes configured

And allocate it at least 3 CPUs (under "Resources" in the Docker preference UI).

If you want to execute your pipeline on a remote kubernetes cluster, make sure the cluster is configured using :

kubectl config set-context <your remote kubernetes cluster>
  1. Build the docker images used by your pipeline.

In the example pipeline above, you can see that tasks and services have an "image" field - such as "my_static_input_task_image". This means that the task is executed inside a docker container, and the docker container is created from a docker image where various code and libraries are installed.

You can take a look at what the build process looks like, e.g. here

In order for the images to be available for your pipeline, you'll need to build them locally:

cd </path/to/your/liminal/code>
liminal build

You'll see that a number of outputs indicating various docker images built.

  1. Create a kubernetes local volume
    In case your Yaml includes working with volumes please first run the following command:
cd </path/to/your/liminal/code> 
liminal create
  1. Deploy the pipeline:
cd </path/to/your/liminal/code> 
liminal deploy

Note: after upgrading liminal, it's recommended to issue the command

liminal deploy --clean

This will rebuild the airlfow docker containers from scratch with a fresh version of liminal, ensuring consistency.

  1. Start the server
liminal start
  1. Stop the server
liminal stop
  1. Display the server logs
liminal logs --follow/--tail

Number of lines to show from the end of the log:
liminal logs --tail=10

Follow log output:
liminal logs --follow
  1. Navigate to http://localhost:8080/admin

  2. You should see your pipeline The pipeline is scheduled to run according to the json schedule: 0 * 1 * * field in the .yml file you provided.

  3. To manually activate your pipeline: Click your pipeline and then click "trigger DAG" Click "Graph view" You should see the steps in your pipeline getting executed in "real time" by clicking "Refresh" periodically.

Pipeline activation

Contributing

More information on contributing can be found here

Running Tests (for contributors)

When doing local development and running Liminal unit-tests, make sure to set LIMINAL_STAND_ALONE_MODE=True

Owner
The Apache Software Foundation
The Apache Software Foundation
Graphsignal is a machine learning model monitoring platform.

Graphsignal is a machine learning model monitoring platform. It helps ML engineers, MLOps teams and data scientists to quickly address issues with data and models as well as proactively analyze model

Graphsignal 143 Dec 05, 2022
fMRIprep Pipeline To Machine Learning

fMRIprep Pipeline To Machine Learning(Demo) 所有配置均在config.py文件下定义 前置环境(lilab) 各个节点均安装docker,并有fmripre的镜像 可以使用conda中的base环境(相应的第三份包之后更新) 1. fmriprep scr

Alien 3 Mar 08, 2022
InfiniteBoost: building infinite ensembles with gradient descent

InfiniteBoost Code for a paper InfiniteBoost: building infinite ensembles with gradient descent (arXiv:1706.01109). A. Rogozhnikov, T. Likhomanenko De

Alex Rogozhnikov 183 Jan 03, 2023
(3D): LeGO-LOAM, LIO-SAM, and LVI-SAM installation and application

SLAM-application: installation and test (3D): LeGO-LOAM, LIO-SAM, and LVI-SAM Tested on Quadruped robot in Gazebo ● Results: video, video2 Requirement

EungChang-Mason-Lee 203 Dec 26, 2022
icepickle is to allow a safe way to serialize and deserialize linear scikit-learn models

icepickle It's a cooler way to store simple linear models. The goal of icepickle is to allow a safe way to serialize and deserialize linear scikit-lea

vincent d warmerdam 24 Dec 09, 2022
BASTA: The BAyesian STellar Algorithm

BASTA: BAyesian STellar Algorithm Current stable version: v1.0 Important note: BASTA is developed for Python 3.8, but Python 3.7 should work as well.

BASTA team 16 Nov 15, 2022
Distributed Evolutionary Algorithms in Python

DEAP DEAP is a novel evolutionary computation framework for rapid prototyping and testing of ideas. It seeks to make algorithms explicit and data stru

Distributed Evolutionary Algorithms in Python 4.9k Jan 05, 2023
Machine Learning for RC Cars

Suiron Machine Learning for RC Cars Prediction visualization (green = actual, blue = prediction) Click the video below to see it in action! Dependenci

Kendrick Tan 706 Jan 02, 2023
A linear equation solver using gaussian elimination. Implemented for fun and learning/teaching.

A linear equation solver using gaussian elimination. Implemented for fun and learning/teaching. The solver will solve equations of the type: A can be

Sanjeet N. Dasharath 3 Feb 15, 2022
Python implementation of Weng-Lin Bayesian ranking, a better, license-free alternative to TrueSkill

Python implementation of Weng-Lin Bayesian ranking, a better, license-free alternative to TrueSkill This is a port of the amazing openskill.js package

Open Debates Project 156 Dec 14, 2022
The Emergence of Individuality

The Emergence of Individuality

16 Jul 20, 2022
Stacked Generalization (Ensemble Learning)

Stacking (stacked generalization) Overview ikki407/stacking - Simple and useful stacking library, written in Python. User can use models of scikit-lea

Ikki Tanaka 192 Dec 23, 2022
Create large-scale ML-driven multiscale simulation ensembles to study the interactions

MuMMI RAS v0.1 Released: Nov 16, 2021 MuMMI RAS is the application component of the MuMMI framework developed to create large-scale ML-driven multisca

4 Feb 16, 2022
Random Forest Classification for Neural Subtypes

Random Forest classifier for neural subtypes extracted from extracellular recordings from human brain organoids.

Michael Zabolocki 1 Jan 31, 2022
A python library for easy manipulation and forecasting of time series.

Time Series Made Easy in Python darts is a python library for easy manipulation and forecasting of time series. It contains a variety of models, from

Unit8 5.2k Jan 04, 2023
nn-Meter is a novel and efficient system to accurately predict the inference latency of DNN models on diverse edge devices

A DNN inference latency prediction toolkit for accurately modeling and predicting the latency on diverse edge devices.

Microsoft 241 Dec 26, 2022
ETNA is an easy-to-use time series forecasting framework.

ETNA is an easy-to-use time series forecasting framework. It includes built in toolkits for time series preprocessing, feature generation, a variety of predictive models with unified interface - from

Tinkoff.AI 674 Jan 07, 2023
ETNA – time series forecasting framework

ETNA Time Series Library Predict your time series the easiest way Homepage | Documentation | Tutorials | Contribution Guide | Release Notes ETNA is an

Tinkoff.AI 675 Jan 08, 2023
Distributed scikit-learn meta-estimators in PySpark

sk-dist: Distributed scikit-learn meta-estimators in PySpark What is it? sk-dist is a Python package for machine learning built on top of scikit-learn

Ibotta 282 Dec 09, 2022
Gaussian Process Optimization using GPy

End of maintenance for GPyOpt Dear GPyOpt community! We would like to acknowledge the obvious. The core team of GPyOpt has moved on, and over the past

Sheffield Machine Learning Software 847 Dec 19, 2022