Mortality risk prediction for COVID-19 patients using XGBoost models

Overview

Mortality risk prediction for COVID-19 patients using XGBoost models

Using demographic and lab test data received from the HM Hospitales in Spain, I built an XGBoost binary classifier using binary logistic regression that runs on a simple web app using the streamlit module and predicts the mortality risk of a COVID-19 patient. The user has to pass in the appropriate data as shown in the web app, then click the "Make prediction" button to receive the mortality risk score in a scale of 0-100%.

The "Mortality Risk Model Build" folder contains all of the main files used to construct the final xgboost model chosen that runs on the web app. It conaints scripts for the construction of the training datasets, data preprocessing, data storage, data plotting/visualization, different approaches of xgboost model creation, hyperparameter tuning, validation processes, xgboost model performance visualization, etc.

The "Mortality Risk Web App" folder contains the scripts required to run the web-app. In order to run the web-app, do the following:

  1. Open the "predict_page.py" file and in the load_model() function define the data_path where you've stored the "xgboost_model_225.pkl" file.
  2. Go to your IDE's terminal, change directory to the one that contains the web app files and type "streamlit run web_app.py".

WARNING: The specific model is not up to date with the current COVID-19 data and its results should not be taken seriously. A machine learning model is as good as the data it's trained on.

Machine learning algorithms implementation

Machine learning algorithms implementation This repository consisits of implementation of various machine learning algorithms. The algorithms implemen

Karun Dawadi 1 Jan 03, 2022
Predicting diabetes over a five year period using logistic regression and the Pima First-Nation dataset

Diabetes This script uses the Pima First Nations dataset to create a model to predict whether or not an individual will develop Diabetes Mellitus Type

1 Mar 28, 2022
Evaluate on three different ML model for feature selection using Breast cancer data.

Anomaly-detection-Feature-Selection Evaluate on three different ML model for feature selection using Breast cancer data. ML models: SVM, KNN and MLP.

Tarek idrees 1 Mar 17, 2022
A Collection of Conference & School Notes in Machine Learning 🦄📝🎉

Machine Learning Conference & Summer School Notes. 🦄📝🎉

558 Dec 28, 2022
A Python Package to Tackle the Curse of Imbalanced Datasets in Machine Learning

imbalanced-learn imbalanced-learn is a python package offering a number of re-sampling techniques commonly used in datasets showing strong between-cla

6.2k Jan 01, 2023
Code base of KU AIRS: SPARK Autonomous Vehicle Team

KU AIRS: SPARK Autonomous Vehicle Project Check this link for the blog post describing this project and the video of SPARK in simulation and on parkou

Mehmet Enes Erciyes 1 Nov 23, 2021
PyPOTS - A Python Toolbox for Data Mining on Partially-Observed Time Series

A python toolbox/library for data mining on partially-observed time series, supporting tasks of forecasting/imputation/classification/clustering on incomplete multivariate time series with missing va

Wenjie Du 179 Dec 31, 2022
WAGMA-SGD is a decentralized asynchronous SGD for distributed deep learning training based on model averaging.

WAGMA-SGD is a decentralized asynchronous SGD based on wait-avoiding group model averaging. The synchronization is relaxed by making the collectives externally-triggerable, namely, a collective can b

Shigang Li 6 Jun 18, 2022
Penguins species predictor app is used to classify penguins species created using python's scikit-learn, fastapi, numpy and joblib packages.

Penguins Classification App Penguins species predictor app is used to classify penguins species using their island, sex, bill length (mm), bill depth

Siva Prakash 3 Apr 05, 2022
High performance, easy-to-use, and scalable machine learning (ML) package, including linear model (LR), factorization machines (FM), and field-aware factorization machines (FFM) for Python and CLI interface.

What is xLearn? xLearn is a high performance, easy-to-use, and scalable machine learning package that contains linear model (LR), factorization machin

Chao Ma 3k Jan 08, 2023
Arquivos do curso online sobre a estatística voltada para ciência de dados e aprendizado de máquina.

Estatistica para Ciência de Dados e Machine Learning Arquivos do curso online sobre a estatística voltada para ciência de dados e aprendizado de máqui

Renan Barbosa 1 Jan 10, 2022
K-means clustering is a method used for clustering analysis, especially in data mining and statistics.

K Means Algorithm What is K Means This algorithm is an iterative algorithm that partitions the dataset according to their features into K number of pr

1 Nov 01, 2021
Test symmetries with sklearn decision tree models

Test symmetries with sklearn decision tree models Setup Begin from an environment with a recent version of python 3. source setup.sh Leave the enviro

Rupert Tombs 2 Jul 19, 2022
Titanic Traveller Survivability Prediction

The aim of the mini project is predict whether or not a passenger survived based on attributes such as their age, sex, passenger class, where they embarked and more.

John Phillip 0 Jan 20, 2022
This is the code repository for LRM Stochastic watershed model.

LRM-Squannacook Input data for generating stochastic streamflows are observed and simulated timeseries of streamflow. their format needs to be CSV wit

1 Feb 14, 2022
Real-time domain adaptation for semantic segmentation

Advanced-Machine-Learning This repository contains the code for the project Real

Andrea Cavallo 1 Jan 30, 2022
dirty_cat is a Python module for machine-learning on dirty categorical variables.

dirty_cat dirty_cat is a Python module for machine-learning on dirty categorical variables.

637 Dec 29, 2022
AtsPy: Automated Time Series Models in Python (by @firmai)

Automated Time Series Models in Python (AtsPy) SSRN Report Easily develop state of the art time series models to forecast univariate data series. Simp

Derek Snow 465 Jan 02, 2023
Tribuo - A Java machine learning library

Tribuo - A Java prediction library (v4.1) Tribuo is a machine learning library in Java that provides multi-class classification, regression, clusterin

Oracle 1.1k Dec 28, 2022
Tools for Optuna, MLflow and the integration of both.

HPOflow - Sphinx DOC Tools for Optuna, MLflow and the integration of both. Detailed documentation with examples can be found here: Sphinx DOC Table of

Telekom Open Source Software 17 Nov 20, 2022