Python data loader for Solar Orbiter's (SolO) Energetic Particle Detector (EPD).

Overview

solo-epd-loader

Python data loader for Solar Orbiter's (SolO) Energetic Particle Detector (EPD). Provides level 2 (l2) and low latency (ll) data obtained through CDF files from ESA's Solar Orbiter Archive (SOAR) for the following sensors:

  • Electron Proton Telescope (EPT)
  • High Energy Telescope (HET)
  • SupraThermal Electrons and Protons (STEP)

Installation

solo_epd_loader requires python >= 3.6, and it depends on cdflib and heliopy (which will be automatically installed). It can be installed from PyPI using:

pip install solo-epd-loader

Usage

The standard usecase is to utilize the epd_load function, which returns Pandas dataframe(s) of the EPD measurements and a dictionary containing information on the energy channels.

from solo_epd_loader import epd_load

df_1, df_2, energies = \
    epd_load(sensor, viewing, level, startdate, enddate, path, autodownload)

Input

  • sensor: ept, het, or step (string)
  • viewing: sun, asun, north, or south (string); not needed for sensor = step
  • level: ll or l2 (string)
  • startdate, enddate: YYYYMMDD, e.g., 20210415 (integer) (if no enddate is provided, enddate = startdate will be used)
  • path: directory in which Solar Orbiter data is/should be organized; e.g. /home/userxyz/solo/data/ (string)
  • autodownload: if True will try to download missing data files from SOAR (bolean)

Return

  • For sensor = ept or het:
    1. Pandas dataframe with proton fluxes and errors (for EPT also alpha particles) in ‘particles / (s cm^2 sr MeV)’
    2. Pandas dataframe with electron fluxes and errors in ‘particles / (s cm^2 sr MeV)’
    3. Dictionary with energy information for all particles:
      • String with energy channel info
      • Value of lower energy bin edge in MeV
      • Value of energy bin width in MeV
  • For sensor = step:
    1. Pandas dataframe with fluxes and errors in ‘particles / (s cm^2 sr MeV)’
    2. Dictionary with energy information for all particles:
      • String with energy channel info
      • Value of lower energy bin edge in MeV
      • Value of energy bin width in MeV

Data folder structure

The path variable provided to the module should be the base directory where the corresponding cdf data files should be placed in subdirectories. First subfolder defines the data product level (l2 or low_latency at the moment), the next one the instrument (so far only epd), and finally the sensor (ept, het or step).

For example, the folder structure could look like this: /home/userxyz/solo/data/l2/epd/het. In this case, you should call the loader with path=/home/userxyz/solo/data; i.e., the base directory for the data.

You can use the (automatic) download function described in the following section to let the subfolders be created initially automatically. NB: It might be that you need to run the code with sudo or admin privileges in order to be able to create new folders on your system.

Data download within Python

While using epd_load() to obtain the data, one can choose to automatically download missing data files from SOAR directly from within python. They are saved in the folder provided by the path argument (see above). For that, just add autodownload=True to the function call:

from solo_epd_loader import epd_load

df_protons, df_electrons, energies = \
    epd_load(sensor='het', viewing='sun', level='l2',
             startdate=20200820, enddate=20200821, \
             path='/home/userxyz/solo/data/', autodownload=True)

# plot protons and alphas
ax = df_protons.plot(logy=True, subplots=True, figsize=(20,60))
plt.show()

# plot electrons
ax = df_electrons.plot(logy=True, subplots=True, figsize=(20,60))
plt.show()

Note: The code will always download the latest version of the file available at SOAR. So in case a file V01.cdf is already locally present, V02.cdf will be downloaded nonetheless.

Example 1 - low latency data

Example code that loads low latency (ll) electron and proton (+alphas) fluxes (and errors) for EPT NORTH telescope from Apr 15 2021 to Apr 16 2021 into two Pandas dataframes (one for protons & alphas, one for electrons). In general available are ‘sun’, ‘asun’, ‘north’, and ‘south’ viewing directions for ‘ept’ and ‘het’ telescopes of SolO/EPD.

from solo_epd_loader import *

df_protons, df_electrons, energies = \
    epd_load(sensor='ept', viewing='north', level='ll',
             startdate=20210415, enddate=20210416, \
             path='/home/userxyz/solo/data/')

# plot protons and alphas
ax = df_protons.plot(logy=True, subplots=True, figsize=(20,60))
plt.show()

# plot electrons
ax = df_electrons.plot(logy=True, subplots=True, figsize=(20,60))
plt.show()

Example 2 - level 2 data

Example code that loads level 2 (l2) electron and proton (+alphas) fluxes (and errors) for HET SUN telescope from Aug 20 2020 to Aug 20 2020 into two Pandas dataframes (one for protons & alphas, one for electrons).

from solo_epd_loader import epd_load

df_protons, df_electrons, energies = \
    epd_load(sensor='het', viewing='sun', level='l2',
             startdate=20200820, enddate=20200821, \
             path='/home/userxyz/solo/data/')

# plot protons and alphas
ax = df_protons.plot(logy=True, subplots=True, figsize=(20,60))
plt.show()

# plot electrons
ax = df_electrons.plot(logy=True, subplots=True, figsize=(20,60))
plt.show()

Example 3 - reproducing EPT data from Fig. 2 in Gómez-Herrero et al. 2021 [1]

from solo_epd_loader import epd_load

# set your local path here
lpath = '/home/userxyz/solo/data'

# load data
df_protons, df_electrons, energies = \
    epd_load(sensor='ept', viewing='sun', level='l2', startdate=20200708,
             enddate=20200724, path=lpath, autodownload=True)

# change time resolution to get smoother curve (resample with mean)
resample = '60min'

fig, axs = plt.subplots(2, sharex=True)
fig.suptitle('EPT Sun')

# plot selection of channels
for channel in [0, 8, 16, 26]:
    df_electrons['Electron_Flux'][f'Electron_Flux_{channel}']\
        .resample(resample).mean().plot(ax = axs[0], logy=True,
        label=energies["Electron_Bins_Text"][channel][0])
for channel in [6, 22, 32, 48]:
    df_protons['Ion_Flux'][f'Ion_Flux_{channel}']\
        .resample(resample).mean().plot(ax = axs[1], logy=True,
        label=energies["Ion_Bins_Text"][channel][0])

axs[0].set_ylim([0.3, 4e6])
axs[1].set_ylim([0.01, 5e8])

axs[0].set_ylabel("Electron flux\n"+r"(cm$^2$ sr s MeV)$^{-1}$")
axs[1].set_ylabel("Ion flux\n"+r"(cm$^2$ sr s MeV)$^{-1}$")
axs[0].legend()
axs[1].legend()
plt.subplots_adjust(hspace=0)
plt.show()

NB: This is just an approximate reproduction with different energy channels (smaller, not combined) and different time resolution! Figure

Example 4 - reproducing EPT data from Fig. 2 in Wimmer-Schweingruber et al. 2021 [2]

from solo_epd_loader import epd_load
import datetime

# set your local path here
lpath = '/home/userxyz/solo/data'

# load data
df_protons_sun, df_electrons_sun, energies = \
    epd_load(sensor='ept', viewing='sun', level='l2',
             startdate=20201210, enddate=20201211,
             path=lpath, autodownload=True)
df_protons_asun, df_electrons_asun, energies = \
    epd_load(sensor='ept', viewing='asun', level='l2',
             startdate=20201210, enddate=20201211,
             path=lpath, autodownload=True)
df_protons_south, df_electrons_south, energies = \
    epd_load(sensor='ept', viewing='south', level='l2',
             startdate=20201210, enddate=20201211,
             path=lpath, autodownload=True)
df_protons_north, df_electrons_north, energies = \
    epd_load(sensor='ept', viewing='north', level='l2',
             startdate=20201210, enddate=20201211,
             path=lpath, autodownload=True)

# plot mean intensities of two energy channels; 'channel' defines the lower one
channel = 6
ax = pd.concat([df_electrons_sun['Electron_Flux'][f'Electron_Flux_{channel}'],
                df_electrons_sun['Electron_Flux'][f'Electron_Flux_{channel+1}']],
                axis=1).mean(axis=1).plot(logy=True, label='sun', color='#d62728')
ax = pd.concat([df_electrons_asun['Electron_Flux'][f'Electron_Flux_{channel}'],
                df_electrons_asun['Electron_Flux'][f'Electron_Flux_{channel+1}']],
                axis=1).mean(axis=1).plot(logy=True, label='asun', color='#ff7f0e')
ax = pd.concat([df_electrons_north['Electron_Flux'][f'Electron_Flux_{channel}'],
                df_electrons_north['Electron_Flux'][f'Electron_Flux_{channel+1}']],
                axis=1).mean(axis=1).plot(logy=True, label='north', color='#1f77b4')
ax = pd.concat([df_electrons_south['Electron_Flux'][f'Electron_Flux_{channel}'],
                df_electrons_south['Electron_Flux'][f'Electron_Flux_{channel+1}']],
                axis=1).mean(axis=1).plot(logy=True, label='south', color='#2ca02c')

plt.xlim([datetime.datetime(2020, 12, 10, 23, 0),
          datetime.datetime(2020, 12, 11, 12, 0)])

ax.set_ylabel("Electron flux\n"+r"(cm$^2$ sr s MeV)$^{-1}$")
plt.title('EPT electrons ('+str(energies['Electron_Bins_Low_Energy'][channel])
          + '-' + str(energies['Electron_Bins_Low_Energy'][channel+2])+' MeV)')
plt.legend()
plt.show()

NB: This is just an approximate reproduction; e.g., the channel combination is a over-simplified approximation! image1

References

[1] First near-relativistic solar electron events observed by EPD onboard Solar Orbiter, Gómez-Herrero et al., A&A, 656 (2021) L3, https://doi.org/10.1051/0004-6361/202039883
[2] First year of energetic particle measurements in the inner heliosphere with Solar Orbiter’s Energetic Particle Detector, Wimmer-Schweingruber et al., A&A, 656 (2021) A22, https://doi.org/10.1051/0004-6361/202140940

License

This project is Copyright (c) Jan Gieseler and licensed under the terms of the BSD 3-clause license. This package is based upon the Openastronomy packaging guide which is licensed under the BSD 3-clause licence. See the licenses folder for more information.

Comments
  • Environment variable for path

    Environment variable for path

    Would it be possible to use (optionally) an environment variable for the path (preferably the same for all loaders)? That would make it much easier for multi-user environments to have data in one location only. Granted, it would possibly also need some file permission changing as well...

    enhancement 
    opened by tlml 12
  • Replacing FILLVALUES not working with pandas 1.5.0

    Replacing FILLVALUES not working with pandas 1.5.0

    At least until pandas 1.4.4 the replacement of FILLVAUES done by the following code worked: https://github.com/jgieseler/solo-epd-loader/blob/f92e4e995a273d5755792c3f02e4ea3c33cfc675/solo_epd_loader/init.py#L754-L761

    But since pandas 1.5.0 it doesn't work anymore, and the values of -1e+31 are not replaced with np.nan's.

    I don't know the reason, maybe it has to do with the fact that the corresponding DataFrames have a MultiIndex.

    bug 
    opened by jgieseler 1
  • Catch error that python doesn't have rights to create folders

    Catch error that python doesn't have rights to create folders

    Data for the different detectors are downloaded in subdirectories of the data directory provided by path. Under some circumstances, the script doesn't have the necessary rights to create these folders if they don't already exist. Then a FileNotFoundError: [Errno 2] No such file or directory: {path+subdir+file} is raised.

    Catch this problem and/or provide a meaningful warning message.

    bug 
    opened by jgieseler 1
  • Change from heliopy's cdf2lib to sunpy's read_cdf

    Change from heliopy's cdf2lib to sunpy's read_cdf

    Change the function to read cdf files from heliopy's cdf2lib() to sunpy's read_cdf() in _read_epd_cdf(); i.e., applies to EPT and HET data, not STEP data. The latter is read in manually using cdflib

    opened by jgieseler 0
  • Make downloading of all viewings optional

    Make downloading of all viewings optional

    SolO/EPD/EPT has for viewing directions; each delivered in a separate data file. Right now, all viewing files are downloaded for a requested day, even so the call to solo-epd-loader specifically asks for a single viewing direction and only returns that data. This has been included in the beginning because usually we have been interested in having all viewing-direction files anyhow. But it makes sense to have this at least as an option, so that you can deactivate this behaviour in case you want to only have e.g. the 'sun' viewing direction.

    enhancement 
    opened by jgieseler 0
  • Include resampling functionality

    Include resampling functionality

    Include resampling functionality like https://github.com/serpentine-h2020/SEPpy/blob/bc2e3e0662a019147d25bd554edbceaf7328e25b/seppy/loader/stereo.py#L24-L38

    enhancement 
    opened by jgieseler 0
  • Clean install_requires in setup.cfg

    Clean install_requires in setup.cfg

    With https://github.com/jgieseler/solo-epd-loader/commit/8fede59ac7a529cb1189f1ac40ddf20755b5cdaf bz4 and datetime have been added to the install_requires in setup.cfg (in the progress of establishing some testing), but this is not liked by the conda-forge version, which complains when bz4 and datetime are listed as requirements in the meta.yaml file. This needs to be sorted out.

    Until then, pip check has been removed from meta.yaml, cf. https://github.com/jgieseler/solo-epd-loader-feedstock/commit/9d9eda523e1690fc1d520bca4a4a40eba521b6be

    opened by jgieseler 0
  • Set level='l2' as default

    Set level='l2' as default

    Right now, level is a required positional argument. Set this by default to 'l2' because this should be the standard data product one should use if in doubt.

    opened by jgieseler 0
  • Add calc_av_en_flux_EPD()

    Add calc_av_en_flux_EPD()

    Add function that averages the flux of several energy channels into a combined energy channel. In principle already available here, but needs to be corectly integrated.

    enhancement 
    opened by jgieseler 1
  • Use sunpy_soar for downloading data from SOAR

    Use sunpy_soar for downloading data from SOAR

    sunpy_soar supports since v1.4 also low latency data. So it now is able to obtain all the same data we're downloading until now with solo_epd_loader (the source is in both cases ESA's SOAR). For the future, it would be worthwhile to completely move the downloading process to sunpy_soar to avoid duplication (and sunpy_soar is definitely much better written than my code 😅).

    enhancement 
    opened by jgieseler 1
Releases(v0.1.11)
Owner
Jan Gieseler
Jan Gieseler
Script to automate the scanning of "old printed photos"

photoscanner Script to automate the scanning of "old printed photos" Just run: ./scan_photos.py The script is prepared to be run by fades. Otherw

Facundo Batista 2 Jan 21, 2022
Controller state monitor plugin for EVA ICS

eva-plugin-cmon Controller status monitor plugin for EVA ICS Monitors connected controllers status in SFA and pushes measurements into an external Inf

Altertech 1 Nov 06, 2021
A simple python project that can find Tangkeke in a given image.

A simple python project that can find Tangkeke in a given image. Make the real Tangkeke image as a kernel to convolute the target image. The area wher

张志衡 1 Dec 08, 2021
Simple cash register system made with guizero

Eje-Casher なにこれ guizeroで作った簡易レジシステムです。実際にコミケで使う予定です。 これを誰かがそのまま使うかどうかというよりは、guiz

Akira Ouchi 4 Nov 07, 2022
CountdownTimer - Countdown Timer For Python

Countdown Timer This python script asks for the user time (input) in seconds, an

Arinzechukwu Okoye 1 Jan 01, 2022
NFT generator for Solana!

Solseum NFT Generator for Solana! Check this guide here! Creating your randomized uniques NFTs, getting rarity information and displaying it on a webp

Solseum™ VR NFTs 145 Dec 30, 2022
Batch obfuscator based on the obfuscation method used by the trick bot launcher

Batch obfuscator based on the obfuscation method used by the trick bot launcher

SlizBinksman 2 Mar 19, 2022
Python module to work with Magneto Database directly without using broken Magento 2 core

Python module to work with Magneto Database directly without using broken Magento 2 core

Egor Shitikov 13 Nov 10, 2022
A python script that changes your desktop background based on current weather and time of the day.

Desktop background wallpaper, based on current weather and time A python script that changes your computer's desktop background based on current weath

Maj Gaberšček 1 Nov 16, 2021
Automated Changelog/release note generation

Quickly generate changelogs and release notes by analysing your git history. A tool written in python, but works on any language.

Documatic 95 Jan 03, 2023
It is a Blender Tool which can convert the Object Data Attributes in face corner to the UVs or Vertex Color.

Blender_ObjectDataAttributesConvertTool It is a Blender Tool which can convert the Object Data Attributes in face corner to the UVs or Vertex Color. D

Takeshi Chō 2 Jan 08, 2022
Python library for generating CycloneDX SBOMs

Python Library for generating CycloneDX This CycloneDX module for Python can generate valid CycloneDX bill-of-material document containing an aggregat

CycloneDX SBOM Standard 31 Dec 16, 2022
Simple package to make requests throughout Tor with circuit renewal.

AutoTor Table of Contents About the Project Contents Dependencies Getting Started Installation Coding Contributing About the Project Simple package to

Salvador Belenguer 6 Jan 01, 2023
JupyterLite as a Datasette plugin

datasette-jupyterlite JupyterLite as a Datasette plugin Installation Install this plugin in the same environment as Datasette. $ datasette install dat

Simon Willison 11 Sep 19, 2022
A python package for batch import of resume attachments to be parsed in HrFlow.

HrFlow Importer Description A python package for batch import of resume attachments to be parsed in HrFlow. hrflow-importer is an open-source project

HrFlow.ai (ex: Riminder.net) 3 Nov 15, 2022
nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order

nbsafety adds a layer of protection to computational notebooks by solving the stale dependency problem when executing cells out-of-order

150 Jan 07, 2023
An example project which contains the Unity components necessary to complete Navigation2's SLAM tutorial with a Turtlebot3, using a custom Unity environment in place of Gazebo.

Navigation 2 SLAM Example This example provides a Unity Project and a colcon workspace that, when used together, allows a user to substitute Unity as

Unity Technologies 183 Jan 04, 2023
Pulse sequence builder and compiler for q1asm

q1pulse Pulse sequence builder and compiler for q1asm. q1pulse is a simple library to compile pulse sequence to q1asm, the assembly language of Qblox

Sander de Snoo 3 Dec 14, 2022
DG - A(n) (unusual) programming language

DG - A(n) (unusual) programming language General structure There are no infix-operators (i.e. 1 + 1) Each operator takes 2 parameters When there are m

1 Mar 05, 2022
A series of basic programs written in Python

Primeros programas en Python Una serie de programas básicos escritos en Python

Madirex 1 Feb 15, 2022