Plant extraction workflow

Source code for the plant extraction workflow introduced in the paper "Agricultural Plant Cataloging and Establishment of a Data Framework from UAV-based Crop Images by Computer Vision"

Installation

1. Create new Python environment and activate it

Tested with Python 3.9.4+

$ python -m venv .venv
$ source .venv/bin/activate

2. Install requirements and package

$ pip install -U pip
$ pip install -r requirements.txt
$ python setup.py install

Start demo workflow

• UAV image data located in data/ folder
• ground truth data located in data/ground_truth/ folder

$ scripts/run_plantextraction.py -c config/demo.yml

• results will be saved in results/ folder

Directory contents

• config: Pipeline configurations for plant extraction workflow in YAML format
• data: Folder with UAV images and ground truth data
• plant_extraction: Actual code of plant extraction workflow implementation
• scripts: Scripts to execute drone image analysis workflows.