Fast, differentiable sorting and ranking in PyTorch

Overview

Torchsort

Tests

Fast, differentiable sorting and ranking in PyTorch.

Pure PyTorch implementation of Fast Differentiable Sorting and Ranking (Blondel et al.). Much of the code is copied from the original Numpy implementation at google-research/fast-soft-sort, with the isotonic regression solver rewritten as a PyTorch C++ and CUDA extension.

Install

pip install torchsort

To build the CUDA extension you will need the CUDA toolchain installed. If you want to build in an environment without a CUDA runtime (e.g. docker), you will need to export the environment variable TORCH_CUDA_ARCH_LIST="Pascal;Volta;Turing;Ampere" before installing.

Usage

torchsort exposes two functions: soft_rank and soft_sort, each with parameters regularization ("l2" or "kl") and regularization_strength (a scalar value). Each will rank/sort the last dimension of a 2-d tensor, with an accuracy dependant upon the regularization strength:

import torch
import torchsort

x = torch.tensor([[8, 0, 5, 3, 2, 1, 6, 7, 9]])

torchsort.soft_sort(x, regularization_strength=1.0)
# tensor([[0.5556, 1.5556, 2.5556, 3.5556, 4.5556, 5.5556, 6.5556, 7.5556, 8.5556]])
torchsort.soft_sort(x, regularization_strength=0.1)
# tensor([[-0., 1., 2., 3., 5., 6., 7., 8., 9.]])

torchsort.soft_rank(x)
# tensor([[8., 1., 5., 4., 3., 2., 6., 7., 9.]])

Both operations are fully differentiable, on CPU or GPU:

x = torch.tensor([[8., 0., 5., 3., 2., 1., 6., 7., 9.]], requires_grad=True).cuda()
y = torchsort.soft_sort(x)

torch.autograd.grad(y[0, 0], x)
# (tensor([[0.1111, 0.1111, 0.1111, 0.1111, 0.1111, 0.1111, 0.1111, 0.1111, 0.1111]],
#         device='cuda:0'),)

Example

Spearman's Rank Coefficient

Spearman's rank coefficient is a very useful metric for measuring how monotonically related two variables are. We can use Torchsort to create a differentiable Spearman's rank coefficient function so that we can optimize a model directly for this metric:

import torch
import torchsort

def spearmanr(pred, target, **kw):
    pred = torchsort.soft_rank(pred, **kw)
    target = torchsort.soft_rank(target, **kw)
    pred = pred - pred.mean()
    pred = pred / pred.norm()
    target = target - target.mean()
    target = target / target.norm()
    return (pred * target).sum()

pred = torch.tensor([[1., 2., 3., 4., 5.]], requires_grad=True)
target = torch.tensor([[5., 6., 7., 8., 7.]])
spearman = spearmanr(pred, target)
# tensor(0.8321)

torch.autograd.grad(spearman, pred)
# (tensor([[-5.5470e-02,  2.9802e-09,  5.5470e-02,  1.1094e-01, -1.1094e-01]]),)

Benchmark

Benchmark

torchsort and fast_soft_sort each operate with a time complexity of O(n log n), each with some additional overhead when compared to the built-in torch.sort. With a batch size of 1 (see left), the Numba JIT'd forward pass of fast_soft_sort performs about on-par with the torchsort CPU kernel, however its backward pass still relies on some Python code, which greatly penalizes its performance.

Furthermore, the torchsort kernel supports batches, and yields much better performance than fast_soft_sort as the batch size increases.

Benchmark

The torchsort CUDA kernel performs quite well with sequence lengths under ~2000, and scales to extremely large batch sizes. In the future the CUDA kernel can likely be further optimized to achieve performance closer to that of the built in torch.sort.

Reference

@inproceedings{blondel2020fast,
  title={Fast differentiable sorting and ranking},
  author={Blondel, Mathieu and Teboul, Olivier and Berthet, Quentin and Djolonga, Josip},
  booktitle={International Conference on Machine Learning},
  pages={950--959},
  year={2020},
  organization={PMLR}
}
Comments
  • Failing to recognise torchsort cuda even when torch with cuda is successfully installed

    Failing to recognise torchsort cuda even when torch with cuda is successfully installed

    Thanks for the awesome package!

    system: linux (arch) python: 3.8

    So i've got a weird chicken-egg issue.

    I successfully install pytorch using the suggested conda command

    install pytorch torchvision torchaudio cudatoolkit=11.3 -c pytorch

    and verify it recognises the gpu a = torch.tensor([1,2,3]).cuda(device=0)

    then i run the demo code

    ImportError: You are trying to use the torchsort CUDA extension, but it looks like it is not available. Make sure you have the CUDA toolchain installed, and reinstall torchsort with pip install --force-reinstall --no-cache-dir torchsort to rebuild the extension.

    x = torch.tensor([[8., 0., 5., 3., 2., 1., 6., 7., 9.]], requires_grad=True).cuda()
    y = torchsort.soft_sort(x)
    

    and it gives me the error

    ImportError: You are trying to use the torchsort CUDA extension, but it looks like it is not available. Make sure you have the CUDA toolchain installed, and reinstall torchsort with `pip install --force-reinstall --no-cache-dir torchsort` to rebuild the extension.
    

    ...so I go to install (again) it as suggested. this is where the first weirdness happens: torchsort tries to download pytorch again!

    Collecting torch
    Downloading torch-1.12.1-cp38-cp38-manylinux1_x86_64.whl (776.3 MB)
    ...
    Attempting uninstall: torch
    Found existing installation: torch 1.12.1
    Uninstalling torch-1.12.1:
    Successfully uninstalled torch-1.12.1
    ...
    Successfully installed torch-1.12.1 torchsort-0.1.9 typing-extensions-4.4.0
    

    so it succeeds, but when I got back into code the gpu is no longer recognised!

    And then re-install again with the conda snippet and pytorch itself is working again (but torchsort with cuda doesn't)

    Is there some procedure I'm missing? Or some python version weirdness that's breaking things?

    cheers!

    opened by MushroomHunting 13
  • pip install failed in windows

    pip install failed in windows

    Hi, I faced an installation error in windows. It installed fine in my ubuntu system. Could you tell me how I can fix it?

    Internal error: assertion failed at: "C:/dvs/p4/build/sw/rel/gpu_drv/r400/r400_00/drivers/compiler/edg/EDG_4.14/
    src/decl_spec.c", line 9596
        
        
        1 catastrophic error detected in the compilation of "C:/Users/Reasat/AppData/Local/Temp/tmpxft_000028b0_00000000
    -5_isotonic_cuda.cpp4.ii".
        Compilation aborted.
        isotonic_cuda.cu
        nvcc error   : 'cudafe++' died with status 0xC0000409
        error: command 'C:\\Program Files\\NVIDIA GPU Computing Toolkit\\CUDA\\v10.0\\bin\\nvcc.exe' failed with exit st
    atus 9
        Error in atexit._run_exitfuncs:
        Traceback (most recent call last):
          File "C:\Users\Reasat\AppData\Roaming\Python\Python37\site-packages\colorama\ansitowin32.py", line 59, in clos
    ed
            return stream.closed
        ValueError: underlying buffer has been detached
        ----------------------------------------
    ERROR: Command errored out with exit status 1: 'D:\Miniconda3\envs\pytorch\python.exe' -u -c 'import sys, setuptools
    , tokenize; sys.argv[0] = '"'"'C:\\Users\\Reasat\\AppData\\Local\\Temp\\pip-install-uw3b5i5w\\torchsort_f8d66d1aaac6
    44a78d37585cc7273f94\\setup.py'"'"'; __file__='"'"'C:\\Users\\Reasat\\AppData\\Local\\Temp\\pip-install-uw3b5i5w\\to
    rchsort_f8d66d1aaac644a78d37585cc7273f94\\setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.r
    ead().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --recor
    d 'C:\Users\Reasat\AppData\Local\Temp\pip-record-nbabfu8b\install-record.txt' --single-version-externally-managed --
    compile --install-headers 'D:\Miniconda3\envs\pytorch\Include\torchsort' Check the logs for full command output.
    
    opened by Reasat 12
  • cuda TypeError: 'NoneType' object is not callable

    cuda TypeError: 'NoneType' object is not callable

    >>> import torch
    >>> import torchsort
    >>> x = torch.tensor([[8., 0., 5., 3., 2., 1., 6., 7., 9.]], requires_grad=True).cuda()
    >>> y = torchsort.soft_sort(x)
    
    Traceback (most recent call last):
      File "<stdin>", line 1, in <module>
      File "/home/shuiy/anaconda3/envs/pytorch_py3/lib/python3.7/site-packages/torchsort/ops.py", line 48, in soft_sort
        return SoftSort.apply(values, regularization, regularization_strength)
      File "/home/shuiy/anaconda3/envs/pytorch_py3/lib/python3.7/site-packages/torchsort/ops.py", line 132, in forward
        sol = isotonic_l2[s.device.type](w - s)
    TypeError: 'NoneType' object is not callable
    

    on jupyter notebook is:

    ---------------------------------------------------------------------------
    TypeError                                 Traceback (most recent call last)
    /tmp/ipykernel_8938/1075883647.py in <module>
          1 x = torch.tensor([[8., 0., 5., 3., 2., 1., 6., 7., 9.]], requires_grad=True).cuda()
    ----> 2 y = torchsort.soft_sort(x)
    
    ~/anaconda3/envs/pytorch_py3/lib/python3.7/site-packages/torchsort/ops.py in soft_sort(values, regularization, regularization_strength)
         46     if regularization not in ["l2", "kl"]:
         47         raise ValueError(f"'regularization' should be a 'l2' or 'kl'")
    ---> 48     return SoftSort.apply(values, regularization, regularization_strength)
         49 
         50 
    
    ~/anaconda3/envs/pytorch_py3/lib/python3.7/site-packages/torchsort/ops.py in forward(ctx, tensor, regularization, regularization_strength)
        130         # note reverse order of args
        131         if ctx.regularization == "l2":
    --> 132             sol = isotonic_l2[s.device.type](w - s)
        133         else:
        134             sol = isotonic_kl[s.device.type](w, s)
    
    TypeError: 'NoneType' object is not callable
    

    if x is on cpu(), run code is ok python 3.7.10, pytorch 1.9.0 , cudatoolkit=11.1, ubuntu 18.04

    opened by shuiyuejihua 11
  • Problem installing when no GPU present (in docker build step for example)

    Problem installing when no GPU present (in docker build step for example)

    Doesn't install during docker build phase (that does not have GPUs configured).

    Get error: /root/miniconda/lib/python3.8/site-packages/torch/cuda/init.py:52: UserWarning: CUDA initialization: Found no NVIDIA driver on your system. Please check that you have an NVIDIA GPU and installed a driver from http://www.nvidia.com/Download/index.aspx (Triggered internally at /opt/conda/conda-bld/pytorch_1607370172916/work/c10/cuda/CUDAFunctions.cpp:100.) return torch._C._cuda_getDeviceCount() > 0

    If I install on the same image after running it with GPUs enabled it installs fine.

    opened by pcnudde 8
  • Unable to install with CUDA

    Unable to install with CUDA

    Hi, I'm excited to use this package but unfortunately am having issues getting it working with CUDA. I am using a conda env and have followed the steps in the README related to that. My torch version is 1.11.0 and my cudatoolkit version is 11.3.1. My Python version is 3.8.13 on a Linux machine if that is relevant.

    From a fresh environment:

    conda install -c pytorch pytorch torchvision cudatoolkit=11.3
    pip install torchsort 
    

    then if I try to use torchsort on a CUDA tensor, I get ImportError: You are trying to use the torchsort CUDA extension, but it looks like it is not available. Make sure you have the CUDA toolchain installed, and reinstall torchsort withpip install --force-reinstall --no-cache-dir torchsortto rebuild the extension. (which I have tried a few times now).

    Any help in getting this working would be amazing! Thanks so much!

    opened by sachit-menon 7
  • Hi, NVIDIA CUDA version >= 11.4 does not seem to install successfully.

    Hi, NVIDIA CUDA version >= 11.4 does not seem to install successfully.

    I tried to install the package in Tesla A100 and GeForce RTX 3090 with CUDA version 11.4 both failed. Can you provide some help please? Thank you very much!

    opened by XiaoqiWang 7
  • Any help a pip3 install --user issue?

    Any help a pip3 install --user issue?

    Here is my error code:

    Using legacy 'setup.py install' for torchsort, since package 'wheel' is not installed.
    Installing collected packages: torchsort
        Running setup.py install for torchsort ... \       error
    ERROR: Command errored out with exit status 1:  
         command: /share/software/user/open/python/3.9.0/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-rc2snp_l/torchsort_02ab43cb664b4f778f8057965fe69d12/setup.py'"'"'; __file__='"'"'/tmp/pip-install-rc2snp_l/torchsort_02ab43cb664b4f778f8057965fe69d12/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-0etipwtv/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/users/huangda/.local/include/python3.9/torchsort
             cwd: /tmp/pip-install-rc2snp_l/torchsort_02ab43cb664b4f778f8057965fe69d12/
        Complete output (31 lines):  
        No CUDA runtime is found, using CUDA_HOME='/share/software/user/open/cuda/11.2.0'  
        running install  
        running build  
        running build_py  
        creating build  
        creating build/lib.linux-x86_64-3.9  
        creating build/lib.linux-x86_64-3.9/torchsort  
        copying torchsort/__init__.py -> build/lib.linux-x86_64-3.9/torchsort  
        copying torchsort/ops.py -> build/lib.linux-x86_64-3.9/torchsort  
        running egg_info  
        writing torchsort.egg-info/PKG-INFO  
        writing dependency_links to torchsort.egg-info/dependency_links.txt    
        writing requirements to torchsort.egg-info/requires.txt  
        writing top-level names to torchsort.egg-info/top_level.txt  
        /share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/utils/cpp_extension.py:369: UserWarning: Attempted to use ninja as the BuildExtension backend but we could not find ninja.. Falling back to using the slow distutils backend.  
          warnings.warn(msg.format('we could not find ninja.'))  
        reading manifest file 'torchsort.egg-info/SOURCES.txt'  
        reading manifest template 'MANIFEST.in'  
        writing manifest file 'torchsort.egg-info/SOURCES.txt'  
        copying torchsort/isotonic_cpu.cpp -> build/lib.linux-x86_64-3.9/torchsort  
        copying torchsort/isotonic_cuda.cu -> build/lib.linux-x86_64-3.9/torchsort  
        running build_ext   
        building 'torchsort.isotonic_cpu' extension  
        creating build/temp.linux-x86_64-3.9  
        creating build/temp.linux-x86_64-3.9/torchsort  
        gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/share/software/user/open/py- 
     pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include/TH -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include/THC -I/share/software/user/open/python/3.9.0/include/python3.9 -c torchsort/isotonic_cpu.cpp -o build/temp.linux-x86_64-3.9/torchsort/isotonic_cpu.o -fopenmp -ffast-math -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=isotonic_cpu -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
        c++ -pthread -shared -L/share/software/user/open/libffi/3.2.1/lib64 -L/share/software/user/open/libressl/3.2.1/lib -L/share/software/user/open/sqlite/3.18.0/lib -L/share/software/user/open/tcltk/8.6.6/lib -L/share/software/user/open/xz/5.2.3/lib -L/share/software/user/open/zlib/1.2.11/lib build/temp.linux-x86_64-3.9/torchsort/isotonic_cpu.o -L/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/lib -L/share/software/user/open/python/3.9.0/lib -lc10 -ltorch -ltorch_cpu -ltorch_python -o build/lib.linux-x86_64-3.9/torchsort/isotonic_cpu.cpython-39-x86_64-linux-gnu.so
        building 'torchsort.isotonic_cuda' extension
        /share/software/user/open/cuda/11.2.0/bin/nvcc -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include/TH -I/share/software/user/open/py-pytorch/1.8.1_py39/lib/python3.9/site-packages/torch/include/THC -I/share/software/user/open/cuda/11.2.0/include -I/share/software/user/open/python/3.9.0/include/python3.9 -c torchsort/isotonic_cuda.cu -o build/temp.linux-x86_64-3.9/torchsort/isotonic_cuda.o -D__CUDA_NO_HALF_OPERATORS__ -D__CUDA_NO_HALF_CONVERSIONS__ -D__CUDA_NO_BFLOAT16_CONVERSIONS__ -D__CUDA_NO_HALF2_OPERATORS__ --expt-relaxed-constexpr --compiler-options '-fPIC' -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=isotonic_cuda -D_GLIBCXX_USE_CXX11_ABI=0 -gencode=arch=compute_60,code=sm_60 -gencode=arch=compute_61,code=compute_61 -gencode=arch=compute_61,code=sm_61 -gencode=arch=compute_70,code=compute_70 -gencode=arch=compute_70,code=sm_70 -gencode=arch=compute_75,code=compute_75 -gencode=arch=compute_75,code=sm_75 -gencode=arch=compute_80,code=sm_80 -gencode=arch=compute_86,code=compute_86 -gencode=arch=compute_86,code=sm_86 -ccbin gcc -std=c++14
        nvcc error   : 'cicc' died due to signal 9 (Kill signal)  
        error: command '/share/software/user/open/cuda/11.2.0/bin/nvcc' failed with exit code 9  
        ----------------------------------------
    ERROR: Command errored out with exit status 1: /share/software/user/open/python/3.9.0/bin/python3.9 -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-rc2snp_l/torchsort_02ab43cb664b4f778f8057965fe69d12/setup.py'"'"'; __file__='"'"'/tmp/pip-install-rc2snp_l/torchsort_02ab43cb664b4f778f8057965fe69d12/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-0etipwtv/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/users/huangda/.local/include/python3.9/torchsort Check the logs for full command output.
    

    Has anybody else experienced this before? The full command I am running is:

    TORCH_CUDA_ARCH_LIST="Pascal;Volta;Turing;Ampere" pip3 install --user torchsort

    opened by derekahuang 6
  • soft_rank has memory leak?

    soft_rank has memory leak?

    Hi I have installed the main branch, and I'm seeing that the torchsort.soft_rank function is causing memory leaks. Looking at, nvidia-smi, it does not free up any memory and I see the following printed out over and over:

    [W pthreadpool-cpp.cc:90] Warning: Leaking Caffe2 thread-pool after fork. (function pthreadpool)
    
    opened by ashkan-leo 6
  • RuntimeError: CUDA error: an illegal memory access was encountered

    RuntimeError: CUDA error: an illegal memory access was encountered

    I got the below error when training my network for a while (10-20 epochs). Traceback (most recent call last): File "train.py", line 232, in <module> main() File "train.py", line 179, in main train(cfg, train_loader, model, criterion, optimizer, lr_scheduler, epoch, final_output_dir, tb_log_dir, writer_dict) File "/home/maxchu/Fin/numerai_dev/function.py", line 62, in train loss, loss_indv = criterion(pred, target, auto_pred, auto_target) File "/home/maxchu/fin_venv/lib/python3.8/site-packages/torch/nn/modules/module.py", line 889, in _call_impl result = self.forward(*input, **kwargs) File "/home/maxchu/Fin/numerai_dev/loss.py", line 39, in forward - 0.1 * spearman(pred, target, regularization_strength=1e-2), File "/home/maxchu/Fin/numerai_dev/loss.py", line 24, in spearman pred = torchsort.soft_rank( File "/home/maxchu/fin_venv/lib/python3.8/site-packages/torchsort-0.1.4-py3.8-linux-x86_64.egg/torchsort/ops.py", line 40, in soft_rank return SoftRank.apply(values, regularization, regularization_strength) File "/home/maxchu/fin_venv/lib/python3.8/site-packages/torchsort-0.1.4-py3.8-linux-x86_64.egg/torchsort/ops.py", line 96, in forward ret = (s - dual_sol).gather(1, inv_permutation) RuntimeError: CUDA error: an illegal memory access was encountered Some details:

    1. System: Ubuntu 18.06
    2. Python 3.8 using venv
    3. Install method: Manual compile (git clone -> python setup.py install)
    4. PyTorch 1.8.0 with cuda 10.2 (and correspinding pytorch geometric package)

    Please let me know if you need more informations.

    opened by MaxChu719 6
  • Cannot install using poetry

    Cannot install using poetry

    Hello I am installing the package using poetry and I get the following error. Any tip how I can do this?

    
      Command ['/home/ashkan/w/numersub/.venv/bin/python', '-m', 'pip', 'install', '--use-pep517', '--disable-pip-version-check', '--prefix', '/home/ashkan/w/numersub/.venv', '--no-deps', '/home/ashkan/.cache/pypoetry/artifacts/0e/71/4c/36d2482ca69c4e6c8ff5dbed48ecc16ad2bf8ea2c110395f1b50bfffc5/torchsort-0.1.9.tar.gz'] errored with the following return code 1, and output:
      Processing /home/ashkan/.cache/pypoetry/artifacts/0e/71/4c/36d2482ca69c4e6c8ff5dbed48ecc16ad2bf8ea2c110395f1b50bfffc5/torchsort-0.1.9.tar.gz
        Installing build dependencies: started
        Installing build dependencies: finished with status 'done'
        Getting requirements to build wheel: started
        Getting requirements to build wheel: finished with status 'error'
        error: subprocess-exited-with-error
    
        × Getting requirements to build wheel did not run successfully.
        │ exit code: 1
        ╰─> [17 lines of output]
            Traceback (most recent call last):
              File "/home/ashkan/w/numersub/.venv/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
                main()
              File "/home/ashkan/w/numersub/.venv/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
                json_out['return_val'] = hook(**hook_input['kwargs'])
              File "/home/ashkan/w/numersub/.venv/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 130, in get_requires_for_build_wheel
                return hook(config_settings)
              File "/tmp/pip-build-env-zc4jpjhm/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 338, in get_requires_for_build_wheel
                return self._get_build_requires(config_settings, requirements=['wheel'])
              File "/tmp/pip-build-env-zc4jpjhm/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 320, in _get_build_requires
                self.run_setup()
              File "/tmp/pip-build-env-zc4jpjhm/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 483, in run_setup
                super(_BuildMetaLegacyBackend,
              File "/tmp/pip-build-env-zc4jpjhm/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 335, in run_setup
                exec(code, locals())
              File "<string>", line 8, in <module>
            ModuleNotFoundError: No module named 'torch'
            [end of output]
    
        note: This error originates from a subprocess, and is likely not a problem with pip.
      error: subprocess-exited-with-error
    
      × Getting requirements to build wheel did not run successfully.
      │ exit code: 1
      ╰─> See above for output.
    
      note: This error originates from a subprocess, and is likely not a problem with pip.
    
    
    
    
    opened by ashkan-leo 5
  • isotonic_cpu.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _ZNK2at6Tensor8data_ptrIfEEPT_v

    isotonic_cpu.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _ZNK2at6Tensor8data_ptrIfEEPT_v

    Hello, thank you for the library. I am trying to use spearmanr example from the main README.md on V100s and A100s GPUs but getting error below. cuda 11.3 pytorch 1.10.0 python 3.7.11 torchsort 0.1.7

    File "/truba/home/fkahraman/miniconda3/envs/openmmlab/lib/python3.7/site-packages/torchsort/ops.py", line 18, in from .isotonic_cpu import isotonic_kl as isotonic_kl_cpu ImportError: /truba/home/fkahraman/miniconda3/envs/openmmlab/lib/python3.7/site-packages/torchsort/isotonic_cpu.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _ZNK2at6Tensor8data_ptrIfEEPT_v from .isotonic_cpu import isotonic_kl as isotonic_kl_cpu ImportError: /truba/home/fkahraman/miniconda3/envs/openmmlab/lib/python3.7/site-packages/torchsort/isotonic_cpu.cpython-37m-x86_64-linux-gnu.so: undefined symbol: _ZNK2at6Tensor8data_ptrIfEEPT_v ERROR:torch.distributed.elastic.multiprocessing.api:failed (exitcode: 1) local_rank: 0 (pid: 99273) of binary: /truba/home/fkahraman/miniconda3/envs/openmmlab/bin/python

    opened by fehmikahraman 5
  • Using TorchSort for TSP Solver

    Using TorchSort for TSP Solver

    Hello,

    I am using torchsort.soft_rank to get ranked indices from the model output logits, and then calculate a loss function for TSP (Travelling Salesman Problem) as follows. (I had previously tried it with argsort but switched to soft_rank as it was not differentiable).

    points = torch.rand(args.funcd, 2).cuda().requires_grad_()
    
    def path_reward(rank):
        #a = points[rank]
        a = points.index_select(0, rank)
        b = torch.cat((a[1:], a[0].unsqueeze(0)))
        return pdist(a,b).sum()
    
    rank = torchsort.soft_rank(logits, regularization_strength=0.001).floor().long() - 1
    

    However, network weights are still not getting updated by optimizer. I suspect this may be because index_select, as I have read that it is non-differentiable with respect to the index. Could you recommend an alternative solution for solving TSP via soft_rank?

    Happy new year.

    Sincerely, Kamer

    opened by kayuksel 1
  • CUDA benchmarks might be misleading

    CUDA benchmarks might be misleading

    I wanted to try to improve/modify the torchsort code a little so I tried making a copy of the SoftSort class and the soft_sort function.

    Running some benchmarks I got the following results: benchmark_custom benchmark_custom_cuda

    Which was worrying. The carbon copy diverges at a similar point to the figure in the readme:

    I then re-ran the benchmark with the exact same function twice (not even a copy) and got the same results.

    That code can be found here:

    import sys
    from collections import defaultdict
    from timeit import timeit
    
    import matplotlib.pyplot as plt
    import torch
    
    import torchsort
    
    try:
        import fast_soft_sort.pytorch_ops as fss
    except ImportError:
        print("install fast_soft_sort:")
        print("pip install git+https://github.com/google-research/fast-soft-sort")
        sys.exit()
    
    
    N = list(range(1, 5_000, 100))
    B = [2 ** i for i in range(9)]
    B_CUDA = [2 ** i for i in range(13)]
    SAMPLES = 100
    CONVERT = 1e-6  # convert seconds to micro-seconds
    
    
    def time(f):
        return timeit(f, number=SAMPLES) / SAMPLES / CONVERT
    
    
    def backward(f, x):
        y = f(x)
        torch.autograd.grad(y.sum(), x)
    
    
    def style(name):
        if name == "torch.sort":
            return {"color": "blue"}
        linestyle = "--" if "backward" in name else "-"
        if "fast_soft_sort" in name:
            return {"color": "green", "linestyle": linestyle}
        elif "again" in name:
            return {"color": "red", "linestyle": linestyle}
        else:
            return {"color": "orange", "linestyle": linestyle}
    
    
    def batch_size(ax):
        data = defaultdict(list)
        for b in B:
            x = torch.randn(b, 100)
            # data["torch.sort"].append(time(lambda: torch.sort(x)))
            data["torchsort"].append(time(lambda: torchsort.soft_sort(x)))
            data["torchsort_again"].append(time(lambda: torchsort.soft_sort(x)))
            # data["fast_soft_sort"].append(time(lambda: fss.soft_sort(x)))
            x = torch.randn(b, 100, requires_grad=True)
            data["torchsort (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
            data["torchsort_again (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
            # data["fast_soft_sort (with backward)"].append(
            #     time(lambda: backward(fss.soft_sort, x))
            # )
    
        for label in data.keys():
            ax.plot(B, data[label], label=label, **style(label))
        ax.set_xlabel("Batch Size")
        ax.set_ylim(0, 5000)
        ax.set_ylabel("Execution Time (μs)")
        ax.legend()
    
    
    def sequence_length(ax):
        data = defaultdict(list)
        for n in N:
            x = torch.randn(1, n)
            # data["torch.sort"].append(time(lambda: torch.sort(x)))
            data["torchsort"].append(time(lambda: torchsort.soft_sort(x)))
            data["torchsort_again"].append(time(lambda: torchsort.soft_sort(x)))
            # data["fast_soft_sort"].append(time(lambda: fss.soft_sort(x)))
            x = torch.randn(1, n, requires_grad=True)
            data["torchsort (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
            data["torchsort_again (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
            # data["fast_soft_sort (with backward)"].append(
            #     time(lambda: backward(fss.soft_sort, x))
            # )
    
        for label in data.keys():
            ax.plot(N, data[label], label=label, **style(label))
        ax.set_xlabel("Sequence Length")
        ax.set_ylim(0, 1000)
        ax.set_ylabel("Execution Time (μs)")
        ax.legend()
    
    
    def batch_size_cuda(ax):
        data = defaultdict(list)
        for b in B_CUDA:
            x = torch.randn(b, 100).cuda()
            # data["torch.sort"].append(time(lambda: torch.sort(x)))
            data["torchsort"].append(time(lambda: torchsort.soft_sort(x)))
            data["torchsort_again"].append(time(lambda: torchsort.soft_sort(x)))
            x = torch.randn(b, 100, requires_grad=True).cuda()
            data["torchsort (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
            data["torchsort_again (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
        for label in data.keys():
            ax.plot(B_CUDA, data[label], label=label, **style(label))
        ax.set_xlabel("Batch Size")
        ax.set_ylabel("Execution Time (μs)")
        ax.legend()
    
    
    def sequence_length_cuda(ax):
        data = defaultdict(list)
        for n in N:
            x = torch.randn(1, n).cuda()
            # data["torch.sort"].append(time(lambda: torch.sort(x)))
            data["torchsort"].append(time(lambda: torchsort.soft_sort(x)))
            data["torchsort_again"].append(time(lambda: torchsort.soft_sort(x)))
            x = torch.randn(1, n, requires_grad=True).cuda()
            data["torchsort (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
            data["torchsort_again (with backward)"].append(
                time(lambda: backward(torchsort.soft_sort, x))
            )
        for label in data.keys():
            ax.plot(N, data[label], label=label, **style(label))
        ax.set_xlabel("Sequence Length")
        ax.set_ylabel("Execution Time (μs)")
        ax.legend()
    
    
    if __name__ == "__main__":
        # jit/warmup
        x = torch.randn(1, 10, requires_grad=True)
        backward(torchsort.soft_sort, x)
        backward(fss.soft_sort, x)
    
        fig, (ax1, ax2) = plt.subplots(figsize=(10, 4), ncols=2)
        sequence_length(ax1)
        batch_size(ax2)
        fig.suptitle("Torchsort Benchmark: CPU")
        fig.tight_layout()
        plt.savefig("extra/benchmark3.png")
    
        if torch.cuda.is_available():
            # warmup
            x = torch.randn(1, 10, requires_grad=True).cuda()
            backward(torchsort.soft_sort, x)
    
            fig, (ax1, ax2) = plt.subplots(figsize=(10, 4), ncols=2)
            sequence_length_cuda(ax1)
            batch_size_cuda(ax2)
            fig.suptitle("Torchsort Benchmark: CUDA")
            fig.tight_layout()
            plt.savefig("extra/benchmark_cuda3.png")
    

    Any idea what this might depend on?

    opened by zimonitrome 1
  • Can I sort by specific column?

    Can I sort by specific column?

    Is there any way to sort a tensor by a given column?

    For example, soring by first column:

    input_tensor = torch.tensor([
            [1, 5], 
            [30, 30], 
            [6, 9], 
            [80, -2]
    ])
    
    target_tensor = torch.tensor([
            [80, -2],
            [30, 30], 
            [6, 9], 
            [1, 5], 
    ])
    
    enhancement 
    opened by zimonitrome 7
  • Reproducing CIFAR results

    Reproducing CIFAR results

    Thanks a lot for this implementation. I was wondering how can I use the repo to reproduce the results on CIFAR as reported in the paper. As I understand, the target one-hot encoding will serve as top-k classification(k=1). But, after obtaining the logits and passing through the softmax(putting output [0, 1]) the objective is to make the output follow the target ordering. How can this be achieved?

    question 
    opened by paganpasta 8
Releases(v0.1.9)
Owner
Teddy Koker
Machine Learning Researcher @mit-ll
Teddy Koker
Codes for CIKM'21 paper 'Self-Supervised Graph Co-Training for Session-based Recommendation'.

COTREC Codes for CIKM'21 paper 'Self-Supervised Graph Co-Training for Session-based Recommendation'. Requirements: Python 3.7, Pytorch 1.6.0 Best Hype

Xin Xia 42 Dec 09, 2022
A Jupyter notebook to play with NVIDIA's StyleGAN3 and OpenAI's CLIP for a text-based guided image generation.

A Jupyter notebook to play with NVIDIA's StyleGAN3 and OpenAI's CLIP for a text-based guided image generation.

Eugenio Herrera 175 Dec 29, 2022
The devkit of the nuPlan dataset.

The devkit of the nuPlan dataset.

Motional 264 Jan 03, 2023
smc.covid is an R package related to the paper A sequential Monte Carlo approach to estimate a time varying reproduction number in infectious disease models: the COVID-19 case by Storvik et al

smc.covid smc.covid is an R package related to the paper A sequential Monte Carlo approach to estimate a time varying reproduction number in infectiou

0 Oct 15, 2021
ArcaneGAN by Alex Spirin

ArcaneGAN by Alex Spirin

Alex 617 Dec 28, 2022
Online-compatible Unsupervised Non-resonant Anomaly Detection Repository

Online-compatible Unsupervised Non-resonant Anomaly Detection Repository Repository containing all scripts used in the studies of Online-compatible Un

0 Nov 09, 2021
Part-Aware Data Augmentation for 3D Object Detection in Point Cloud

Part-Aware Data Augmentation for 3D Object Detection in Point Cloud This repository contains a reference implementation of our Part-Aware Data Augment

Jaeseok Choi 62 Jan 03, 2023
Application of the L2HMC algorithm to simulations in lattice QCD.

l2hmc-qcd 📊 Slides Recent talk on Training Topological Samplers for Lattice Gauge Theory from the Machine Learning for High Energy Physics, on and of

Sam Foreman 37 Dec 14, 2022
IGCN : Image-to-graph convolutional network

IGCN : Image-to-graph convolutional network IGCN is a learning framework for 2D/3D deformable model registration and alignment, and shape reconstructi

Megumi Nakao 7 Oct 27, 2022
Python binding for Khiva library.

Khiva-Python Build Documentation Build Linux and Mac OS Build Windows Code Coverage README This is the Khiva Python binding, it allows the usage of Kh

Shapelets 46 Oct 16, 2022
Pytorch implementation of Compressive Transformers, from Deepmind

Compressive Transformer in Pytorch Pytorch implementation of Compressive Transformers, a variant of Transformer-XL with compressed memory for long-ran

Phil Wang 118 Dec 01, 2022
Mouse Brain in the Model Zoo

Deep Neural Mouse Brain Modeling This is the repository for the ongoing deep neural mouse modeling project, an attempt to characterize the representat

Colin Conwell 15 Aug 22, 2022
Testing the Facial Emotion Recognition (FER) algorithm on animations

PegHeads-Tutorial-3 Testing the Facial Emotion Recognition (FER) algorithm on animations

PegHeads Inc 2 Jan 03, 2022
Object detection, 3D detection, and pose estimation using center point detection:

Objects as Points Object detection, 3D detection, and pose estimation using center point detection: Objects as Points, Xingyi Zhou, Dequan Wang, Phili

Xingyi Zhou 6.7k Jan 03, 2023
🔥🔥High-Performance Face Recognition Library on PaddlePaddle & PyTorch🔥🔥

face.evoLVe: High-Performance Face Recognition Library based on PaddlePaddle & PyTorch Evolve to be more comprehensive, effective and efficient for fa

Zhao Jian 3.1k Jan 04, 2023
basic tutorial on pytorch

Quick Tutorial on PyTorch PyTorch Basics Linear Regression Logistic Regression Artificial Neural Networks Convolutional Neural Networks Recurrent Neur

7 Sep 15, 2022
Official implementation of ACMMM'20 paper 'Self-supervised Video Representation Learning Using Inter-intra Contrastive Framework'

Self-supervised Video Representation Learning Using Inter-intra Contrastive Framework Official code for paper, Self-supervised Video Representation Le

Li Tao 103 Dec 21, 2022
Code for CPM-2 Pre-Train

CPM-2 Pre-Train Pre-train CPM-2 此分支为110亿非 MoE 模型的预训练代码,MoE 模型的预训练代码请切换到 moe 分支 CPM-2技术报告请参考link。 0 模型下载 请在智源资源下载页面进行申请,文件介绍如下: 文件名 描述 参数大小 100000.tar

Tsinghua AI 136 Dec 28, 2022
Repository for the Bias Benchmark for QA dataset.

BBQ Repository for the Bias Benchmark for QA dataset. Authors: Alicia Parrish, Angelica Chen, Nikita Nangia, Vishakh Padmakumar, Jason Phang, Jana Tho

ML² AT CILVR 18 Nov 18, 2022
Torchserve server using a YoloV5 model running on docker with GPU and static batch inference to perform production ready inference.

Yolov5 running on TorchServe (GPU compatible) ! This is a dockerfile to run TorchServe for Yolo v5 object detection model. (TorchServe (PyTorch librar

82 Nov 29, 2022