A library to inspect itermediate layers of PyTorch models.

Overview

A library to inspect itermediate layers of PyTorch models.

Why?

It's often the case that we want to inspect intermediate layers of a model without modifying the code e.g. visualize attention matrices of language models, get values from an intermediate layer to feed to another layer, or applying a loss function to intermediate layers.

Install

$ pip install surgeon-pytorch

PyPI - Python Version

Usage

Inspect

Given a PyTorch model we can display all layers using get_layers:

import torch
import torch.nn as nn

from surgeon_pytorch import Inspect, get_layers

class SomeModel(nn.Module):

    def __init__(self):
        super().__init__()
        self.layer1 = nn.Linear(5, 3)
        self.layer2 = nn.Linear(3, 2)
        self.layer3 = nn.Linear(2, 1)

    def forward(self, x):
        x1 = self.layer1(x)
        x2 = self.layer2(x1)
        y = self.layer3(x2)
        return y


model = SomeModel()
print(get_layers(model)) # ['layer1', 'layer2', 'layer3']

Then we can wrap our model to be inspected using Inspect and in every forward call the new model we will also output the provided layer outputs (in second return value):

model_wrapped = Inspect(model, layer='layer2')
x = torch.rand(1, 5)
y, x2 = model_wrapped(x)
print(x2) # tensor([[-0.2726,  0.0910]], grad_fn=<AddmmBackward0>)

We can also provide a list of layers:

model_wrapped = Inspect(model, layer=['layer1', 'layer2'])
x = torch.rand(1, 5)
y, [x1, x2] = model_wrapped(x)
print(x1) # tensor([[ 0.1739,  0.3844, -0.4724]], grad_fn=<AddmmBackward0>)
print(x2) # tensor([[-0.2238,  0.0107]], grad_fn=<AddmmBackward0>)

Or a dictionary to get named outputs:

model_wrapped = Inspect(model, layer={'x1': 'layer1', 'x2': 'layer2'})
x = torch.rand(1, 5)
y, layers = model_wrapped(x)
print(layers)
"""
{
    'x1': tensor([[ 0.3707,  0.6584, -0.2970]], grad_fn=<AddmmBackward0>),
    'x2': tensor([[-0.1953, -0.3408]], grad_fn=<AddmmBackward0>)
}
"""

TODO

  • add extract function to get intermediate block
You might also like...
Ever felt tired after preprocessing the dataset, and not wanting to write any code further to train your model? Ever encountered a situation where you wanted to record the hyperparameters of the trained model and able to retrieve it afterward? Models Playground is here to help you do that. Models playground allows you to train your models right from the browser. pyhsmm - library for approximate unsupervised inference in Bayesian Hidden Markov Models (HMMs) and explicit-duration Hidden semi-Markov Models (HSMMs), focusing on the Bayesian Nonparametric extensions, the HDP-HMM and HDP-HSMM, mostly with weak-limit approximations. PyTorch implementation and pretrained models for XCiT models. See XCiT: Cross-Covariance Image Transformer
TorchGeo is a PyTorch domain library, similar to torchvision, that provides datasets, transforms, samplers, and pre-trained models specific to geospatial data.

TorchGeo is a PyTorch domain library, similar to torchvision, that provides datasets, transforms, samplers, and pre-trained models specific to geospatial data.

Pytorch library for end-to-end transformer models training and serving

Pytorch library for end-to-end transformer models training and serving

This repository provides an efficient PyTorch-based library for training deep models.

An Efficient Library for Training Deep Models This repository provides an efficient PyTorch-based library for training deep models. Installation Make

TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

TorchMultimodal (Alpha Release) Introduction TorchMultimodal is a PyTorch library for training state-of-the-art multimodal multi-task models at scale.

Objective of the repository is to learn and build machine learning models using Pytorch. 30DaysofML Using Pytorch
Objective of the repository is to learn and build machine learning models using Pytorch. 30DaysofML Using Pytorch

30 Days Of Machine Learning Using Pytorch Objective of the repository is to learn and build machine learning models using Pytorch. List of Algorithms

Pretrained SOTA Deep Learning models, callbacks and more for research and production with PyTorch Lightning and PyTorch
Pretrained SOTA Deep Learning models, callbacks and more for research and production with PyTorch Lightning and PyTorch

Pretrained SOTA Deep Learning models, callbacks and more for research and production with PyTorch Lightning and PyTorch

Comments
  • Use one backbone with different heads

    Use one backbone with different heads

    Is it possible to save the results from the backbone and apply them on the heads of the all the other models. My goal was to try to save time by avoiding repeating the backbone part. Instead of running the 3 complete models (left), only run the backbone 1 time and switch only the heads for the 3 models (right), therefore not repeating executing the backbone every time in yolov5 model.

    Thank you for the help!

    question 
    opened by brunopatricio2012 4
  • Support for DataParallel?

    Support for DataParallel?

    Hi, I noticed that the current version does not support parallel models (at least those created using torch.nn.DataParallel) since the forward hook does not differentiate between the different copies of the model and a model wrapped with Inspect will just return the intermediate features of the last copy of the parallelized model to run.

    Are you planning on fixing this issue/supporting this use case?

    opened by zimmerrol 1
Releases(0.0.4)
Owner
archinet.ai
AI Research Group
archinet.ai
OpenABC-D: A Large-Scale Dataset For Machine Learning Guided Integrated Circuit Synthesis

OpenABC-D: A Large-Scale Dataset For Machine Learning Guided Integrated Circuit Synthesis Overview OpenABC-D is a large-scale labeled dataset generate

NYU Machine-Learning guided Design Automation (MLDA) 31 Nov 22, 2022
MediaPipeで姿勢推定を行い、Tokyo2020オリンピック風のピクトグラムを表示するデモ

Tokyo2020-Pictogram-using-MediaPipe MediaPipeで姿勢推定を行い、Tokyo2020オリンピック風のピクトグラムを表示するデモです。 Tokyo2020Pictgram02.mp4 Requirement mediapipe 0.8.6 or later O

KazuhitoTakahashi 295 Dec 26, 2022
Rethinking Nearest Neighbors for Visual Classification

Rethinking Nearest Neighbors for Visual Classification arXiv Environment settings Check out scripts/env_setup.sh Setup data Download the following fin

Menglin Jia 29 Oct 11, 2022
Camera Distortion-aware 3D Human Pose Estimation in Video with Optimization-based Meta-Learning

Camera Distortion-aware 3D Human Pose Estimation in Video with Optimization-based Meta-Learning This is the official repository of "Camera Distortion-

Hanbyel Cho 12 Oct 06, 2022
Source code for paper "ATP: AMRize Than Parse! Enhancing AMR Parsing with PseudoAMRs" @NAACL-2022

ATP: AMRize Then Parse! Enhancing AMR Parsing with PseudoAMRs Hi this is the source code of our paper "ATP: AMRize Then Parse! Enhancing AMR Parsing w

Chen Liang 13 Nov 23, 2022
The code for our paper Semi-Supervised Learning with Multi-Head Co-Training

Semi-Supervised Learning with Multi-Head Co-Training (PyTorch) Abstract Co-training, extended from self-training, is one of the frameworks for semi-su

cmc 6 Dec 04, 2022
Beyond imagenet attack (accepted by ICLR 2022) towards crafting adversarial examples for black-box domains.

Beyond ImageNet Attack: Towards Crafting Adversarial Examples for Black-box Domains (ICLR'2022) This is the Pytorch code for our paper Beyond ImageNet

Alibaba-AAIG 37 Nov 23, 2022
Graph neural network message passing reframed as a Transformer with local attention

Adjacent Attention Network An implementation of a simple transformer that is equivalent to graph neural network where the message passing is done with

Phil Wang 49 Dec 28, 2022
PyTorch implementation for our paper Learning Character-Agnostic Motion for Motion Retargeting in 2D, SIGGRAPH 2019

Learning Character-Agnostic Motion for Motion Retargeting in 2D We provide PyTorch implementation for our paper Learning Character-Agnostic Motion for

Rundi Wu 367 Dec 22, 2022
Image Data Augmentation in Keras

Image data augmentation is a technique that can be used to artificially expand the size of a training dataset by creating modified versions of images in the dataset.

Grace Ugochi Nneji 3 Feb 15, 2022
Code for Overinterpretation paper Overinterpretation reveals image classification model pathologies

Overinterpretation This repository contains the code for the paper: Overinterpretation reveals image classification model pathologies Authors: Brandon

Gifford Lab, MIT CSAIL 17 Dec 10, 2022
A repo that contains all the mesh keys needed for mesh backend, along with a code example of how to use them in python

Mesh-Keys A repo that contains all the mesh keys needed for mesh backend, along with a code example of how to use them in python Have been seeing alot

Joseph 53 Dec 13, 2022
Jaxtorch (a jax nn library)

Jaxtorch (a jax nn library) This is my jax based nn library. I created this because I was annoyed by the complexity and 'magic'-ness of the popular ja

nshepperd 17 Dec 08, 2022
Transformer Tracking (CVPR2021)

TransT - Transformer Tracking [CVPR2021] Official implementation of the TransT (CVPR2021) , including training code and trained models. We are revisin

chenxin 465 Jan 06, 2023
Attention mechanism with MNIST dataset

[TensorFlow] Attention mechanism with MNIST dataset Usage $ python run.py Result Training Loss graph. Test Each figure shows input digit, attention ma

YeongHyeon Park 12 Jun 10, 2022
A Dataset for Direct Quotation Extraction and Attribution in News Articles.

DirectQuote - A Dataset for Direct Quotation Extraction and Attribution in News Articles DirectQuote is a corpus containing 19,760 paragraphs and 10,3

THUNLP-MT 9 Sep 23, 2022
Code release for "BoxeR: Box-Attention for 2D and 3D Transformers"

BoxeR By Duy-Kien Nguyen, Jihong Ju, Olaf Booij, Martin R. Oswald, Cees Snoek. This repository is an official implementation of the paper BoxeR: Box-A

Nguyen Duy Kien 111 Dec 07, 2022
Multiview Neural Surface Reconstruction by Disentangling Geometry and Appearance

Multiview Neural Surface Reconstruction by Disentangling Geometry and Appearance Project Page | Paper | Data This repository contains an implementatio

Lior Yariv 521 Dec 30, 2022
Human annotated noisy labels for CIFAR-10 and CIFAR-100.

Dataloader for CIFAR-N CIFAR-10N noise_label = torch.load('./data/CIFAR-10_human.pt') clean_label = noise_label['clean_label'] worst_label = noise_lab

<a href=[email protected]"> 117 Nov 30, 2022
PyTorch reimplementation of Diffusion Models

PyTorch pretrained Diffusion Models A PyTorch reimplementation of Denoising Diffusion Probabilistic Models with checkpoints converted from the author'

Patrick Esser 265 Jan 01, 2023