DenseClus is a Python module for clustering mixed type data using UMAP and HDBSCAN

Related tags

Data Analysispythonclusteringembeddingmachinelearning-python
Overview

Amazon DenseClus

build PyPI version PyPI - Python Version PyPI - Wheel PyPI - License Code style: black Github Super-Linter

DenseClus is a Python module for clustering mixed type data using UMAP and HDBSCAN. Allowing for both categorical and numerical data, DenseClus makes it possible to incorporate all features in clustering.

Installation

python3 -m pip install Amazon-DenseClus

Usage

DenseClus requires a Panda's dataframe as input with both numerical and categorical columns. All preprocessing and extraction are done under the hood, just call fit and then retrieve the clusters!

from denseclus import DenseClus

clf = DenseClus(
    umap_combine_method="intersection_union_mapper",
)
clf.fit(df)

print(clf.score())

Examples

A hands-on example with an overview of how to use is currently available in the form of a Jupyter Notebook.

References

@article{mcinnes2018umap-software,
  title={UMAP: Uniform Manifold Approximation and Projection},
  author={McInnes, Leland and Healy, John and Saul, Nathaniel and Grossberger, Lukas},
  journal={The Journal of Open Source Software},
  volume={3},
  number={29},
  pages={861},
  year={2018}
}
@article{mcinnes2017hdbscan,
  title={hdbscan: Hierarchical density based clustering},
  author={McInnes, Leland and Healy, John and Astels, Steve},
  journal={The Journal of Open Source Software},
  volume={2},
  number={11},
  pages={205},
  year={2017}
}
Owner
Amazon Web Services - Labs
AWS Labs
Amazon Web Services - Labs
GitHub Repository https://aws.amazon.com/blogs/opensource/introducing-denseclus-an-open-source-clustering-package-for-mixed-type-data/
Statistical package in Python based on Pandas

Pingouin is an open-source statistical package written in Python 3 and based mostly on Pandas and NumPy. Some of its main features are listed below. F

Raphael Vallat 1.2k Dec 31, 2022
Data processing with Pandas.

Processing-data-with-python This is a simple example showing how to use Pandas to create a dataframe and the processing data with python. The jupyter

1 Jan 23, 2022
Desafio 1 ~ Bantotal

Challenge 01 | Bantotal Please read the instructions for the challenge by selecting your preferred language below: Español Português License Copyright

Maratona Behind the Code 44 Sep 28, 2022
Python reader for Linked Data in HDF5 files

Linked Data are becoming more popular for user-created metadata in HDF5 files.

The HDF Group 8 May 17, 2022
A Numba-based two-point correlation function calculator using a grid decomposition

A Numba-based two-point correlation function (2PCF) calculator using a grid decomposition. Like Corrfunc, but written in Numba, with simplicity and hackability in mind.

Lehman Garrison 3 Aug 24, 2022
A probabilistic programming library for Bayesian deep learning, generative models, based on Tensorflow

ZhuSuan is a Python probabilistic programming library for Bayesian deep learning, which conjoins the complimentary advantages of Bayesian methods and

Tsinghua Machine Learning Group 2.2k Dec 28, 2022
Desafio proposto pela IGTI em seu bootcamp de Cloud Data Engineer

Desafio Modulo 4 - Cloud Data Engineer Bootcamp - IGTI Objetivos Criar infraestrutura como código Utuilizando um cluster Kubernetes na Azure Ingestão

Otacilio Filho 4 Jan 23, 2022
Repositori untuk menyimpan material Long Course STMKGxHMGI tentang Geophysical Python for Seismic Data Analysis

Long Course "Geophysical Python for Seismic Data Analysis" Instruktur: Dr.rer.nat. Wiwit Suryanto, M.Si Dipersiapkan oleh: Anang Sahroni Waktu: Sesi 1

Anang Sahroni 0 Dec 04, 2021
Project under the certification "Data Analysis with Python" on FreeCodeCamp

Sea Level Predictor Assignment You will anaylize a dataset of the global average sea level change since 1880. You will use the data to predict the sea

Bhavya Gopal 3 Jan 31, 2022
An interactive grid for sorting, filtering, and editing DataFrames in Jupyter notebooks

qgrid Qgrid is a Jupyter notebook widget which uses SlickGrid to render pandas DataFrames within a Jupyter notebook. This allows you to explore your D

Quantopian, Inc. 2.9k Jan 08, 2023
wikirepo is a Python package that provides a framework to easily source and leverage standardized Wikidata information

Python based Wikidata framework for easy dataframe extraction wikirepo is a Python package that provides a framework to easily source and leverage sta

Andrew Tavis McAllister 35 Jan 04, 2023
Very useful and necessary functions that simplify working with data

Additional-function-for-pandas Very useful and necessary functions that simplify working with data random_fill_nan(module_name, nan) - Replaces all sp

Alexander Goldian 2 Dec 02, 2021
Analyse the limit order book in seconds. Zoom to tick level or get yourself an overview of the trading day.

Analyse the limit order book in seconds. Zoom to tick level or get yourself an overview of the trading day. Correlate the market activity with the Apple Keynote presentations.

2 Jan 04, 2022
INF42 - Topological Data Analysis

TDA INF421(Conception et analyse d'algorithmes) Projet : Topological Data Analysis SphereMin Etant donné un nuage des points, ce programme contient de

2 Jan 07, 2022
General Assembly's 2015 Data Science course in Washington, DC

DAT8 Course Repository Course materials for General Assembly's Data Science course in Washington, DC (8/18/15 - 10/29/15). Instructor: Kevin Markham (

Kevin Markham 1.6k Jan 07, 2023
A collection of robust and fast processing tools for parsing and analyzing web archive data.

ChatNoir Resiliparse A collection of robust and fast processing tools for parsing and analyzing web archive data. Resiliparse is part of the ChatNoir

ChatNoir 24 Nov 29, 2022
Python scripts aim to use a Random Forest machine learning algorithm to predict the water affinity of Metal-Organic Frameworks

The following Python scripts aim to use a Random Forest machine learning algorithm to predict the water affinity of Metal-Organic Frameworks (MOFs). The training set is extracted from the Cambridge S

1 Jan 09, 2022
Python package to transfer data in a fast, reliable, and packetized form.

pySerialTransfer Python package to transfer data in a fast, reliable, and packetized form.

PB2 101 Dec 07, 2022
Python-based Space Physics Environment Data Analysis Software

pySPEDAS pySPEDAS is an implementation of the SPEDAS framework for Python. The Space Physics Environment Data Analysis Software (SPEDAS) framework is

SPEDAS 98 Dec 22, 2022
Functional Data Analysis, or FDA, is the field of Statistics that analyses data that depend on a continuous parameter.

Functional Data Analysis Python package

Grupo de Aprendizaje Automático - Universidad Autónoma de Madrid 184 Dec 27, 2022