Hi, I am currently pretaining the BERT on my own data. I use the alpha0.0.1a5 branch (newest version).
I found only 20% of the GPU is in use.

+-----------------------------------------------------------------------------+
| NVIDIA-SMI 384.81                 Driver Version: 384.81                    |
|-------------------------------+----------------------+----------------------+
| GPU  Name        Persistence-M| Bus-Id        Disp.A | Volatile Uncorr. ECC |
| Fan  Temp  Perf  Pwr:Usage/Cap|         Memory-Usage | GPU-Util  Compute M. |
|===============================+======================+======================|
|   0  Tesla V100-SXM2...  On   | 00000000:3F:00.0 Off |                    0 |
| N/A   40C    P0    58W / 300W |  10296MiB / 16152MiB |     32%      Default |
+-------------------------------+----------------------+----------------------+
|   1  Tesla V100-SXM2...  On   | 00000000:40:00.0 Off |                    0 |
| N/A   37C    P0    55W / 300W |   2742MiB / 16152MiB |     23%      Default |
+-------------------------------+----------------------+----------------------+
|   2  Tesla V100-SXM2...  On   | 00000000:41:00.0 Off |                    0 |
| N/A   40C    P0    58W / 300W |   2742MiB / 16152MiB |      1%      Default |
+-------------------------------+----------------------+----------------------+
|   3  Tesla V100-SXM2...  On   | 00000000:42:00.0 Off |                    0 |
| N/A   47C    P0    61W / 300W |   2742MiB / 16152MiB |     24%      Default |
+-------------------------------+----------------------+----------------------+
|   4  Tesla V100-SXM2...  On   | 00000000:62:00.0 Off |                    0 |
| N/A   36C    P0    98W / 300W |   2742MiB / 16152MiB |     17%      Default |
+-------------------------------+----------------------+----------------------+
|   5  Tesla V100-SXM2...  On   | 00000000:63:00.0 Off |                    0 |
| N/A   38C    P0    88W / 300W |   2736MiB / 16152MiB |     23%      Default |
+-------------------------------+----------------------+----------------------+
|   6  Tesla V100-SXM2...  On   | 00000000:64:00.0 Off |                    0 |
| N/A   48C    P0    80W / 300W |   2736MiB / 16152MiB |     25%      Default |
+-------------------------------+----------------------+----------------------+
|   7  Tesla V100-SXM2...  On   | 00000000:65:00.0 Off |                    0 |
| N/A   46C    P0    71W / 300W |   2736MiB / 16152MiB |     24%      Default |
+-------------------------------+----------------------+----------------------+

I am not familiar with pytorch. Any one konws why?

Could you give a concrete example of the input data? You gave an example of the corpus data, but not the dataset.small file found in this line:

bert -c data/dataset.small -v data/vocab.small -o output/bert.model

If you could show perhaps a couple of examples, that would be very helpful! I am new to pytorch, so the dataloader function is a little confusing.

I am currently playing around with training and testing the model. However, as I implemented the test section, I'm noticing that during the LM training, your counter doesn't increase when looping over data_iter found in pretrain.py. This would cause problems when calculating the average loss/accuracy, wouldn't it?

div_term = (torch.arange(0, d_model, 2) * -(math.log(10000.0) / d_model)).float().exp() should be: div_term = (torch.arange(0, d_model, 2).float() * -(math.log(10000.0) / d_model)).exp()

In [51]: (torch.arange(0, d_model, 2) * -(math.log(10000.0) / d_model)).float().exp() ...: Out[51]: tensor([1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1., 1.])

Additional question: I don't quite understand how "bidirectional" transformer in the raw paper implemented. Maybe like BiLSTM: concat two direction's transformer output together? Didn't find the similar structure in your code.

I am wondering why don't you use the standard nn version of LayerNorm? I notice the difference is the denomenator: nn.LayerNorm use the {sqrt of (variance + epsilon)} rather than {standard deviation + epsilon}

Could you clarify these 2 approaches?

Thanks for you code ,which let me leran more details for this papper .But i cant't understand segment.py. You haven't writeen how to embedding segment lable .

Nice implements! However, I have a question about learning rate. The learning_rate schedule which from the origin Transformers is warm-up restart, but your implement just simple decay. Could you implement it in your BERT code?

https://github.com/codertimo/BERT-pytorch/blob/7efd2b5a631f18ebc83cd16886b8c6ee77a40750/bert_pytorch/dataset/dataset.py#L50-L64

Well, seems random.random() always returns a positive number, so prob >= prob * 0.9 will always be true?

Hi, Thank you for your clean code on Bert. I have a question about Mask LM loss after I read your code. Your program computes a mask language model loss on both positive sentence pairs and negative pairs.

Does it make sense to compute Mask LM loss on negative sentence pairs? I am not sure how Google computes this loss.

Hi,

Nice try for BERT implementation.

I try to run your code in 4V100 and I find the memory usage is imbalance: the first GPU consume 2x memory than the others. Any idea about the reason?

Btw, I think the parameter order in train.py line 64 is incorrect.

I have problems importing bert when following http://gluon-nlp.mxnet.io/examples/sentence_embedding/bert.html

(mxnet_p36) [[email protected] ~]$ ipython
Python 3.6.6 |Anaconda, Inc.| (default, Jun 28 2018, 17:14:51)
Type 'copyright', 'credits' or 'license' for more information
IPython 6.5.0 -- An enhanced Interactive Python. Type '?' for help.

In [1]: import warnings
   ...: warnings.filterwarnings('ignore')
   ...:
   ...: import random
   ...: import numpy as np
   ...: import mxnet as mx
   ...: from mxnet import gluon
   ...: import gluonnlp as nlp
   ...:
   ...:


In [2]:

In [2]: np.random.seed(100)
   ...: random.seed(100)
   ...: mx.random.seed(10000)
   ...: ctx = mx.gpu(0)
   ...:
   ...:

In [3]: from bert import *
   ...:
---------------------------------------------------------------------------
ModuleNotFoundError                       Traceback (most recent call last)
<ipython-input-3-40b999f3ea6a> in <module>()
----> 1 from bert import *

ModuleNotFoundError: No module named 'bert'

Looks gluonnlp are successfully installed. Any idea?

(mxnet_p36) [[email protected] site-packages]$ ll /ec2-user-anaconda3/envs/mxnet_p36/lib/python3.6/site-packages/gluonnlp-0.5.0.post0-py3.6.egg
-rw-rw-r-- 1 ec2-user ec2-user 499320 Dec 28 23:15 /ec2-user-anaconda3/envs/mxnet_p36/lib/python3.6/site-packages/gluonnlp-0.5.0.post0-py3.6.egg

trainer/pretrain.py

class BERTTrainer:
    def __init__(self, ...):
        ... 
        # Using Negative Log Likelihood Loss function for predicting the masked_token
        self.criterion = nn.NLLLoss(ignore_index=0)
        ...

I cannot understand why ignore index=0 is specified when calculating NLLLoss. If the ground truth of is_next is False (label = 0) in terms of the NSP task but BERT predicts True, then NLLLoss will be 0 (or nan)... so what's the aim of ignore_index = 0 ???

====================

Well, I've found that ignore_index = 0 is useful to the MLM task, but I still can't agree the NSP task should share the same NLLLoss with MLM.

For learning purposes, I added example.ipynb, which is a Google Colab Notebook that works right out of the box. I have also included an example data file that addresses #59 .

Hello,

I have tried to run bert with --with_cuda False, but the model keeps running "forward" function on cuda. These are my command line and the error message I got.

bert -c corpus.small -v vocab.small -o bert.model --with_cuda False -e 5

Loading Vocab vocab.small Vocab Size: 262 Loading Train Dataset corpus.small Loading Dataset: 113it [00:00, 560232.09it/s] Loading Test Dataset None Creating Dataloader Building BERT model Creating BERT Trainer Total Parameters: 6453768 Training Start EP_train:0: 0%|| 0/2 [00:00<?, ?it/s] Traceback (most recent call last): File "/home/yuni/anaconda3/envs/py3/bin/bert", line 8, in sys.exit(train()) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/main.py", line 67, in train trainer.train(epoch) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/trainer/pretrain.py", line 69, in train self.iteration(epoch, self.train_data) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/trainer/pretrain.py", line 102, in iteration next_sent_output, mask_lm_output = self.model.forward(data["bert_input"], data["segment_label"]) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/language_model.py", line 24, in forward x = self.bert(x, segment_label) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl return forward_call(*input, **kwargs) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/bert.py", line 46, in forward x = transformer.forward(x, mask) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/transformer.py", line 29, in forward x = self.input_sublayer(x, lambda _x: self.attention.forward(_x, _x, _x, mask=mask)) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl return forward_call(*input, **kwargs) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/utils/sublayer.py", line 18, in forward return x + self.dropout(sublayer(self.norm(x))) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/transformer.py", line 29, in x = self.input_sublayer(x, lambda _x: self.attention.forward(_x, _x, _x, mask=mask)) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/attention/multi_head.py", line 32, in forward x, attn = self.attention(query, key, value, mask=mask, dropout=self.dropout) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/torch/nn/modules/module.py", line 1102, in _call_impl return forward_call(*input, **kwargs) File "/home/yuni/anaconda3/envs/py3/lib/python3.6/site-packages/bert_pytorch/model/attention/single.py", line 25, in forward return torch.matmul(p_attn, value), p_attn RuntimeError: CUDA out of memory. Tried to allocate 20.00 MiB (GPU 0; 1.95 GiB total capacity; 309.18 MiB already allocated; 125.62 MiB free; 312.00 MiB reserved in total by PyTorch) If reserved memory is >> allocated memory try setting max_split_size_mb to avoid fragmentation. See documentation for Memory Management and PYTORCH_CUDA_ALLOC_CONF

"
def get_random_line(self): if self.on_memory: self.lines[random.randrange(len(self.lines))][1] " This code is to get the incorrect next sentence（isNotNext : 0)， maybe it random get a lines it is (isnext:1)。