A minimal Python package that produces slice plots through h5m DAGMC geometry files

Related tags

Data Visualizationdagmc_geometry_slice_plotter
Overview

A minimal Python package that produces slice plots through h5m DAGMC geometry files

Installation

pip install dagmc_geometry_slice_plotter

Python API Usage

These examples assume you have a h5m file called dagmc.h5m in the same folder that the Python script is being run from.

Create a plot of a slice through the geometry perpendicular to the Z axis and default settings elsewhere. This will slice through the the center of the geometry as plane_origin has not been specified.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Z axis, offset by 200cm and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_origin=[0, 0, 200],
    plane_normal=[0, 0, 1],
)

plot.show()

dagmc slice plot

Create a plot of a slice through the geometry perpendicular to the Y axis, with a rotation of 45 degrees and with default settings elsewhere. Also saves the plot with a high resolution (DPI)

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot = plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal=[0, 1, 0],
    rotate_plot=45,
)

plot.savefig('my_plot3.png', dpi=600)

dagmc slice plot

Saves a png image of a plot of a slice through the geometry perpendicular to the X axis and with default settings elsewhere.

from dagmc_geometry_slice_plotter import plot_slice_of_dagmc_geometry

plot_slice_of_dagmc_geometry(
    dagmc_file_or_trimesh_object='dagmc.h5m',
    plane_normal = [1, 0, 0],
    rotate_plot=270,
    output_filename='my_plot4.png'
)

dagmc slice plot

Related packages

This package is used by the regular_mesh_plotter Python package to combine slice plots with regular mesh tally results and produce images like below.

paramak plot openmc regular mesh tally

paramak plot openmc regular mesh tally

Comments
  • Some funky PyQT errors?

    Some funky PyQT errors?

    Pip installed and got the following error;

    ~/.local/lib/python3.10/site-packages/IPython/external/qt_loaders.py in load_qt(api_options)
    370         return result
    371     else:
--> 372         raise ImportError("""
    373     Could not load requested Qt binding. Please ensure that
    374     PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,

ImportError: 
    Could not load requested Qt binding. Please ensure that
    PyQt4 >= 4.7, PyQt5, PySide >= 1.0.3 or PySide2 is available,
    and only one is imported per session.

    Currently-imported Qt library:                              'pyqt5'
    PyQt4 available (requires QtCore, QtGui, QtSvg):            False
    PyQt5 available (requires QtCore, QtGui, QtSvg, QtWidgets): False
    PySide >= 1.0.3 installed:                                  False
    PySide2 installed:                                          True
    Tried to load:

    But, I do have pyqt5 & PySide2 installed

    opened by makeclean 1
  • added single function that works for file or object

    added single function that works for file or object

    Adds a function called plot_slice_of_dagmc_geometry that can accept either a dagmc file name or a trimesh object and then produce a plot.

    This provides a single entry function for users

    opened by shimwell 1
  • adopted latest py packaging approach

    adopted latest py packaging approach

    A while back I updated this package from a setup.py to use a setup.cfg and a pyproject.toml.

    It is now possible to do everything in the pyproject.toml so this PR updates the packages

    opened by shimwell 0
  • remove internal plotting methods

    remove internal plotting methods

    returning the mplt object and then using the mplt savefig() method offers more flexibility then the built in function offers.

    We can remove the internal function and reduce the code base a bit while maintaining the same functionalilty

    opened by shimwell 0
  • adding ability to make animation

    adding ability to make animation

    It would be handy if the slicer can make an animation

    Perhaps it could accept a tuple for some of these inputs of plane_origin, plane_normal, rotate_plot and then make an animation that sweeps between the inputs.

    A nice tutorial on mpl animations can be found here https://brushingupscience.com/2016/06/21/matplotlib-animations-the-easy-way/

    opened by shimwell 0
  • setuptools_scm is required in setup.cfg

    setuptools_scm is required in setup.cfg

    I might have done something incorrect with the setup.cfg / pyprogject.toml as it appears necessary to add setuptools_scm to the setup.cfg file.

    Without this package the CI fails https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336107961?check_suite_focus=true

    With the package the CI passes https://github.com/fusion-energy/dagmc_geometry_slice_plotter/runs/5336124187?check_suite_focus=true

    I tested the removal of this package in this PR https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14

    I'm just not sure why it setuptools_scm is needed as this is not the case for other packages I've translated to setup.cfg

    opened by shimwell 0
Releases(0.2.1)

  • 0.2.1(Dec 13, 2022)

    What's Changed

    • added axis labels by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/28

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.2.0...0.2.1

    Source code(tar.gz)
    Source code(zip)

  • 0.2.0(Dec 2, 2022)

    What's Changed

    • removed unused script by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/25
    • moved to src project layout by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/26
    • refactoring to allow axis aligned plots by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/27

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.3...0.2.0

    Source code(tar.gz)
    Source code(zip)

  • 0.1.3(Sep 29, 2022)

    What's Changed

    • removed packages that are installed by pyproject by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/22
    • added build back by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/23
    • added missing run cmd by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/24

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.2...0.1.3

    Source code(tar.gz)
    Source code(zip)

  • 0.1.2(Sep 29, 2022)

    What's Changed

    • adopted latest py packaging approach by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/20
    • updating package production by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/21

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.1...0.1.2

    Source code(tar.gz)
    Source code(zip)

  • 0.1.1(Mar 7, 2022)

    What's Changed

    • fixed typo in package name by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/19

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/0.1.0...0.1.1

    Source code(tar.gz)
    Source code(zip)

  • 0.1.0(Feb 25, 2022)

    What's Changed

    • updated to setup.cfg by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/13
    • Added more python versions to the testing by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/14
    • removed output filename option by @shimwell in https://github.com/fusion-energy/dagmc_geometry_slice_plotter/pull/18

    Full Changelog: https://github.com/fusion-energy/dagmc_geometry_slice_plotter/compare/v0.0.5...0.1.0

    Source code(tar.gz)
    Source code(zip)
Owner
Fusion Energy
A collection of software projects related to fusion energy
Fusion Energy
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