A framework for feature exploration in Data Science

Related tags

ScienceBeehive
Overview

Beehive

A framework for feature exploration in Data Science

Background

What do we do when we finish one episode of feature exploration in a jupyter notebook?
We overwrite the notebook or clone the notebook for the next episode of feature exploration.

I say this is inefficient, thus this project.

Purpose

To help documentation for grouping all episode of feature exploration in a single notebook.

Project Elaboration

terms

episode: one set of feature trained on a model.
e.g.
episode_1 = (sepal_length, sepal_width) | (target_class)
episode_2 = (sepal_length, sepal_width, petal_length, petal_width) | (target_class)
episode_3 = (sepal_length_normalized, sepal_width_normalized, petal_length_normalized, petal_width_normalized) | (target_class)

get to know the classes

Combee

One Combee should represent one model and its features includes: (metrics, confusion matrix, feature importances)
(sklearn-based)

CombeKeras

One Combee should represent one model and its features includes: (metrics, confusion matrix)
(keras-based)
needed because Keras has different features and functions compared to sklearn

Vespiqueen

One Vespiqueen should represent one episode.
Vespiqueen memorizes the tranformation of data.
Vespiqueen governs all the Combees.
Can be used to pick which model is best in a Vespiqueen.

Beehive

Beehive governs the whole Vespiqueen.
Beehive is used to print all the metrics across Vespiqueen (or episodes)
Can also be used to pick new features from the last or best vespiqueen for the next episode.

How to Use

Owner
Steven IJ
Steven IJ
SeqLike - flexible biological sequence objects in Python

SeqLike - flexible biological sequence objects in Python Introduction A single object API that makes working with biological sequences in Python more

186 Dec 23, 2022
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

Cookiecutter Data Science A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. Project homepage

6.4k Jan 02, 2023
CS 506 - Computational Tools for Data Science

CS 506 - Computational Tools for Data Science Code, slides, and notes for Boston University CS506 Fall 2021 The Final Project Repository can be found

Lance Galletti 14 Mar 23, 2022
3D medical imaging reconstruction software

InVesalius InVesalius generates 3D medical imaging reconstructions based on a sequence of 2D DICOM files acquired with CT or MRI equipments. InVesaliu

443 Jan 01, 2023
A computer algebra system written in pure Python

SymPy See the AUTHORS file for the list of authors. And many more people helped on the SymPy mailing list, reported bugs, helped organize SymPy's part

SymPy 9.9k Jan 08, 2023
A framework for feature exploration in Data Science

Beehive A framework for feature exploration in Data Science Background What do we do when we finish one episode of feature exploration in a jupyter no

Steven IJ 1 Jan 03, 2022
A modular single-molecule analysis interface

MOSAIC: A modular single-molecule analysis interface MOSAIC is a single molecule analysis toolbox that automatically decodes multi-state nanopore data

National Institute of Standards and Technology 35 Dec 13, 2022
3D visualization of scientific data in Python

Mayavi: 3D visualization of scientific data in Python Mayavi docs: http://docs.enthought.com/mayavi/mayavi/ TVTK docs: http://docs.enthought.com/mayav

Enthought, Inc. 1.1k Jan 06, 2023
Kedro is an open-source Python framework for creating reproducible, maintainable and modular data science code

A Python framework for creating reproducible, maintainable and modular data science code.

QuantumBlack Labs 7.9k Jan 01, 2023
Statsmodels: statistical modeling and econometrics in Python

About statsmodels statsmodels is a Python package that provides a complement to scipy for statistical computations including descriptive statistics an

statsmodels 8.1k Dec 30, 2022
Animation engine for explanatory math videos

Manim is an engine for precise programatic animations, designed for creating explanatory math videos. Note, there are two versions of manim. This repo

Grant Sanderson 48.9k Jan 03, 2023
A mathematica expression evaluator with PokemonTypes

A simple mathematical expression evaluator that uses Pokemon types to replace symbols.

Arnav Jindal 2 Nov 14, 2021
Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

Graphic notes on Gilbert Strang's "Linear Algebra for Everyone"

Kenji Hiranabe 3.2k Jan 08, 2023
Python Data Science Handbook: full text in Jupyter Notebooks

Python Data Science Handbook This repository contains the entire Python Data Science Handbook, in the form of (free!) Jupyter notebooks. How to Use th

Jake Vanderplas 36.9k Dec 28, 2022
CKAN is an open-source DMS (data management system) for powering data hubs and data portals. CKAN makes it easy to publish, share and use data. It powers catalog.data.gov, open.canada.ca/data, data.humdata.org among many other sites.

CKAN: The Open Source Data Portal Software CKAN is the world’s leading open-source data portal platform. CKAN makes it easy to publish, share and work

ckan 3.6k Dec 27, 2022
Doing bayesian data analysis - Python/PyMC3 versions of the programs described in Doing bayesian data analysis by John K. Kruschke

Doing_bayesian_data_analysis This repository contains the Python version of the R programs described in the great book Doing bayesian data analysis (f

Osvaldo Martin 851 Dec 27, 2022
Open Delmic Microscope Software

Odemis Odemis (Open Delmic Microscope Software) is the open-source microscopy software of Delmic B.V. Odemis is used for controlling microscopes of De

Delmic 32 Dec 14, 2022
Veusz scientific plotting application

Veusz 3.3.1 Veusz is a scientific plotting package. It is designed to produce publication-ready PDF or SVG output. Graphs are built-up by combining pl

Veusz 613 Dec 16, 2022
Zipline, a Pythonic Algorithmic Trading Library

Zipline is a Pythonic algorithmic trading library. It is an event-driven system for backtesting. Zipline is currently used in production as the backte

Quantopian, Inc. 15.7k Jan 07, 2023
Algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos

Bioinformatics This is a repository of all the algorithms covered in the Bioinformatics Course part of the Cambridge Computer Science Tripos Algorithm

16 Jun 30, 2022