Sequence-tagging using deep learning

Overview

Classification using Deep Learning

Requirements

  • PyTorch version >= 1.9.1+cu111
  • Python version >= 3.8.10
  • PyTorch-Lightning version >= 1.4.9
  • Huggingface Transformers version >= 4.11.3
  • Tensorboard version >= 2.6.0
  • Pandas >= 1.3.4
  • Scikit-learn: numpy>=1.14.6, scipy>=1.1.0, threadpoolctl>=2.0.0, joblib>=0.11

Installation

pip3 install transformers
pip3 install pytorch-lightning
pip3 install tensorboard
pip3 install pandas
pip3 install scikit-learn
git clone https://github.com/vineetk1/clss.git
cd clss

Note that the default directory is clss. Unless otherwise stated, all commands from the Command-Line-Interface must be delivered from the default directory.

Download the dataset

  1. Create a data directory.
mkdir data
  1. Download a dataset in the data directory.

Saving all informtion and results of an experiment

All information about the experiment is stored in a unique directory whose path starts with tensorboard_logs and ends with a unique version-number. Its contents consist of hparams.yaml, hyperperameters_used.yaml, test-results.txt, events.* files, and a checkpoints directory that has one or more checkpoint-files.

Train, validate, and test a model

Following command trains a model, saves the last checkpoint plus checkpoints that have the lowest validation loss, runs the test dataset on the checkpointed model with the lowest validation loss, and outputs the results of the test:

python3 Main.py input_param_files/bert_seq_class

The user-settable hyper-parameters are in the file input_param_files/bert_seq_class. An explanation on the contents of this file is at input_param_files/README.md. A list of all the hyper-parameters is in the PyTorch-Lightning documentation, and any hyper-parameter can be used.
To assist in Training, the two parameters auto_lr_find and auto_scale_batch_size in the file input_param_files/bert_seq_class enable the software to automatically find an initial Learning-Rate and a Batch-Size respectively.
As training progresses, graphs of "training-loss vs. epoch #", "validation-loss vs. epoch #", and "learning-rate vs. batch #" are plotted in real-time on the TensorBoard. Training is stopped by typing, at the Command-Line-Interface, the keystroke ctrl-c. The current training information is checkpointed, and training stops. Training can be resumed, at some future time, from the checkpointed file.
Dueing testing, the results are sent to the standard-output, and also saved in the *test-results.txt" file that include the following: general information about the dataset and the classes, confusion matrix, precision, recall, f1, average f1, and weighted f1.

Resume training, validation, and testing a model with same hyper-parameters

Resume training a checkpoint model with the same model- and training-states by using the following command:

python3 Main.py input_param_files/bert_seq_class-res_from_chkpt

The user-settable hyper-parameters are in the file input_param_files/bert_seq_class-res_from_chkpt. An explanation on the contents of this file is at input_param_files/README.md.

Change hyper-parameters and continue training, validation, and testing a model

Continue training a checkpoint model with the same model-state but different hyperparameters for the training-state by using the following command:

python3 Main.py input_param_files/bert_seq_class-ld_chkpt

The user-settable hyper-parameters are in the file input_param_filesbert_seq_class-ld_chkpt. An explanation on the contents of this file is at input_param_files/README.md.

Further test a checkpoint model with a new dataset

Test a checkpoint model by using the following command:

python3 Main.py input_param_files/bert_seq_class-ld_chkpt_and_test

The user-settable hyper-parameters are in the file input_param_files/bert_seq_class-ld_chkpt_and_test. An explanation on the contents of this file is at input_param_files/README.md.

Owner
Vineet Kumar
Vineet Kumar
[NeurIPS 2021] Galerkin Transformer: a linear attention without softmax

[NeurIPS 2021] Galerkin Transformer: linear attention without softmax Summary A non-numerical analyst oriented explanation on Toward Data Science abou

Shuhao Cao 159 Dec 20, 2022
Object detection (YOLO) with pytorch, OpenCV and python

Real Time Object/Face Detection Using YOLO-v3 This project implements a real time object and face detection using YOLO algorithm. You only look once,

1 Aug 04, 2022
Zero-shot Synthesis with Group-Supervised Learning (ICLR 2021 paper)

GSL - Zero-shot Synthesis with Group-Supervised Learning Figure: Zero-shot synthesis performance of our method with different dataset (iLab-20M, RaFD,

Andy_Ge 62 Dec 21, 2022
A resource for learning about deep learning techniques from regression to LSTM and Reinforcement Learning using financial data and the fitness functions of algorithmic trading

A tour through tensorflow with financial data I present several models ranging in complexity from simple regression to LSTM and policy networks. The s

195 Dec 07, 2022
The Most Efficient Temporal Difference Learning Framework for 2048

moporgic/TDL2048+ TDL2048+ is a highly optimized temporal difference (TD) learning framework for 2048. Features Many common methods related to 2048 ar

Hung Guei 5 Nov 23, 2022
OpenMMLab Video Perception Toolbox. It supports Video Object Detection (VID), Multiple Object Tracking (MOT), Single Object Tracking (SOT), Video Instance Segmentation (VIS) with a unified framework.

English | 简体中文 Documentation: https://mmtracking.readthedocs.io/ Introduction MMTracking is an open source video perception toolbox based on PyTorch.

OpenMMLab 2.7k Jan 08, 2023
Official Pytorch implementation of RePOSE (ICCV2021)

RePOSE: Iterative Rendering and Refinement for 6D Object Detection (ICCV2021) [Link] Abstract We present RePOSE, a fast iterative refinement method fo

Shun Iwase 68 Nov 15, 2022
Infrastructure as Code (IaC) for a self-hosted version of Gnosis Safe on AWS

Welcome to Yearn Gnosis Safe! Setting up your local environment Infrastructure Deploying Gnosis Safe Prerequisites 1. Create infrastructure for secret

Numan 16 Jul 18, 2022
Code for the paper "Reinforced Active Learning for Image Segmentation"

Reinforced Active Learning for Image Segmentation (RALIS) Code for the paper Reinforced Active Learning for Image Segmentation Dependencies python 3.6

Arantxa Casanova 79 Dec 19, 2022
Generic image compressor for machine learning. Pytorch code for our paper "Lossy compression for lossless prediction".

Lossy Compression for Lossless Prediction Using: Training: This repostiory contains our implementation of the paper: Lossy Compression for Lossless Pr

Yann Dubois 84 Jan 02, 2023
Oscar and VinVL

Oscar: Object-Semantics Aligned Pre-training for Vision-and-Language Tasks VinVL: Revisiting Visual Representations in Vision-Language Models Updates

Microsoft 938 Dec 26, 2022
Implementation of paper "Towards a Unified View of Parameter-Efficient Transfer Learning"

A Unified Framework for Parameter-Efficient Transfer Learning This is the official implementation of the paper: Towards a Unified View of Parameter-Ef

Junxian He 216 Dec 29, 2022
OpenMMLab's Next Generation Video Understanding Toolbox and Benchmark

Introduction English | 简体中文 MMAction2 is an open-source toolbox for video understanding based on PyTorch. It is a part of the OpenMMLab project. The m

OpenMMLab 2.7k Jan 07, 2023
Pytorch implementation of set transformer

set_transformer Official PyTorch implementation of the paper Set Transformer: A Framework for Attention-based Permutation-Invariant Neural Networks .

Juho Lee 410 Jan 06, 2023
Supervised 3D Pre-training on Large-scale 2D Natural Image Datasets for 3D Medical Image Analysis

Introduction This is an implementation of our paper Supervised 3D Pre-training on Large-scale 2D Natural Image Datasets for 3D Medical Image Analysis.

24 Dec 06, 2022
Spectralformer: Rethinking hyperspectral image classification with transformers

Spectralformer: Rethinking hyperspectral image classification with transformers Danfeng Hong, Zhu Han, Jing Yao, Lianru Gao, Bing Zhang, Antonio Plaza

Danfeng Hong 102 Dec 29, 2022
This is the code for "HyperNeRF: A Higher-Dimensional Representation for Topologically Varying Neural Radiance Fields".

HyperNeRF: A Higher-Dimensional Representation for Topologically Varying Neural Radiance Fields This is the code for "HyperNeRF: A Higher-Dimensional

Google 702 Jan 02, 2023
PyTorch implementation for Convolutional Networks with Adaptive Inference Graphs

Convolutional Networks with Adaptive Inference Graphs (ConvNet-AIG) This repository contains a PyTorch implementation of the paper Convolutional Netwo

Andreas Veit 176 Dec 07, 2022
[NeurIPS 2021]: Are Transformers More Robust Than CNNs? (Pytorch implementation & checkpoints)

Are Transformers More Robust Than CNNs? Pytorch implementation for NeurIPS 2021 Paper: Are Transformers More Robust Than CNNs? Our implementation is b

Yutong Bai 145 Dec 01, 2022
A Comprehensive Empirical Study of Vision-Language Pre-trained Model for Supervised Cross-Modal Retrieval

CLIP4CMR A Comprehensive Empirical Study of Vision-Language Pre-trained Model for Supervised Cross-Modal Retrieval The original data and pre-calculate

24 Dec 26, 2022