Histology images query (unsupervised)

Overview

110-1-NTU-DBME5028-Histology-images-query

Final Project: Histology images query (unsupervised) Kaggle: https://www.kaggle.com/c/histology-images-query-competition/overview

Teem members:
f09921058 陳羿翔, r09942171 黃繼綸

Environment

OS : Ubuntu 16.04
Language: Python37 Torch: 21.08+

Introduction

Processing

image


Model (VAE + BYOL)

image


How to use

Download dataset in Kaggle

https://www.kaggle.com/c/histology-images-query-competition/data

$ kaggle competitions download -c histology-images-query-competition

Download the pretrained models

https://drive.google.com/drive/folders/1u2wWuPfb327AHGi8WRCTMiVxmIRPrUHg?usp=sharing

Training from scratch

$ python train.py -v --eta 10 --save_model_path path/to/save --data path/to/train
  • -v: save vae result
  • --eta: Ltotal = Ltask + \eta * Lreconstruction
  • --lamda: Lconstruction = Lmse + \lamda * Lkl

Testing

$ python inference.py --data path/to/test
FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics

FusionNet_Pytorch FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics Requirements Pytorch 0.1.11 Pyt

Choi Gunho 102 Dec 13, 2022
Unofficial implementation of PatchCore anomaly detection

PatchCore anomaly detection Unofficial implementation of PatchCore(new SOTA) anomaly detection model Original Paper : Towards Total Recall in Industri

Changwoo Ha 268 Dec 22, 2022
A Python 3 package for state-of-the-art statistical dimension reduction methods

direpack: a Python 3 library for state-of-the-art statistical dimension reduction techniques This package delivers a scikit-learn compatible Python 3

Sven Serneels 32 Dec 14, 2022
Official code for 'Pixel-wise Energy-biased Abstention Learning for Anomaly Segmentationon Complex Urban Driving Scenes'

PEBAL This repo contains the Pytorch implementation of our paper: Pixel-wise Energy-biased Abstention Learning for Anomaly Segmentationon Complex Urba

Yu Tian 115 Dec 29, 2022
SwinIR: Image Restoration Using Swin Transformer

SwinIR: Image Restoration Using Swin Transformer This repository is the official PyTorch implementation of SwinIR: Image Restoration Using Shifted Win

Jingyun Liang 2.4k Jan 08, 2023
Robust & Reliable Route Recommendation on Road Networks

NeuroMLR: Robust & Reliable Route Recommendation on Road Networks This repository is the official implementation of NeuroMLR: Robust & Reliable Route

4 Dec 20, 2022
Python script that allows you to automatically setup your Growtopia server.

AutoSetup Python script that allows you to automatically setup your Growtopia server. How To Use Firstly, install all the required modules that used i

Aspire 3 Mar 06, 2022
for a paper about leveraging discourse markers for training new models

TSLM-DISCOURSE-MARKERS Scope This repository contains: (1) Code to extract discourse markers from wikipedia (TSA). (1) Code to extract significant dis

International Business Machines 6 Nov 02, 2022
This repository for project that can Automate Number Plate Recognition (ANPR) in Morocco Licensed Vehicles. 💻 + 🚙 + 🇲🇦 = 🤖 🕵🏻‍♂️

MoroccoAI Data Challenge (Edition #001) This Reposotory is result of our work in the comepetiton organized by MoroccoAI in the context of the first Mo

SAFOINE EL KHABICH 14 Oct 31, 2022
TCTrack: Temporal Contexts for Aerial Tracking (CVPR2022)

TCTrack: Temporal Contexts for Aerial Tracking (CVPR2022) Ziang Cao and Ziyuan Huang and Liang Pan and Shiwei Zhang and Ziwei Liu and Changhong Fu In

Intelligent Vision for Robotics in Complex Environment 100 Dec 19, 2022
Official repository of the paper 'Essentials for Class Incremental Learning'

Essentials for Class Incremental Learning Official repository of the paper 'Essentials for Class Incremental Learning' This Pytorch repository contain

33 Nov 27, 2022
Auxiliary Raw Net (ARawNet) is a ASVSpoof detection model taking both raw waveform and handcrafted features as inputs, to balance the trade-off between performance and model complexity.

Overview This repository is an implementation of the Auxiliary Raw Net (ARawNet), which is ASVSpoof detection system taking both raw waveform and hand

6 Jul 08, 2022
Simple helper library to convert a collection of numpy data to tfrecord, and build a tensorflow dataset from the tfrecord.

numpy2tfrecord Simple helper library to convert a collection of numpy data to tfrecord, and build a tensorflow dataset from the tfrecord. Installation

Ryo Yonetani 2 Jan 16, 2022
PyTorch implementation of paper: AdaAttN: Revisit Attention Mechanism in Arbitrary Neural Style Transfer, ICCV 2021.

AdaAttN: Revisit Attention Mechanism in Arbitrary Neural Style Transfer [Paper] [PyTorch Implementation] [Paddle Implementation] Overview This reposit

148 Dec 30, 2022
An Implementation of Fully Convolutional Networks in Tensorflow.

Update An example on how to integrate this code into your own semantic segmentation pipeline can be found in my KittiSeg project repository. tensorflo

Marvin Teichmann 1.1k Dec 12, 2022
Contrastive Loss Gradient Attack (CLGA)

Contrastive Loss Gradient Attack (CLGA) Official implementation of Unsupervised Graph Poisoning Attack via Contrastive Loss Back-propagation, WWW22 Bu

12 Dec 23, 2022
[Preprint] "Chasing Sparsity in Vision Transformers: An End-to-End Exploration" by Tianlong Chen, Yu Cheng, Zhe Gan, Lu Yuan, Lei Zhang, Zhangyang Wang

Chasing Sparsity in Vision Transformers: An End-to-End Exploration Codes for [Preprint] Chasing Sparsity in Vision Transformers: An End-to-End Explora

VITA 64 Dec 08, 2022
Convert Table data to approximate values with GUI

Table_Editor Convert Table data to approximate values with GUIs... usage - Import methods for extension Tables. Imported method supposed to have only

CLJ 1 Jan 10, 2022
DeepMoCap: Deep Optical Motion Capture using multiple Depth Sensors and Retro-reflectors

DeepMoCap: Deep Optical Motion Capture using multiple Depth Sensors and Retro-reflectors By Anargyros Chatzitofis, Dimitris Zarpalas, Stefanos Kollias

tofis 24 Oct 08, 2022
Deeprl - Standard DQN and dueling network for simple games

DeepRL This code implements the standard deep Q-learning and dueling network with experience replay (memory buffer) for playing simple games. DQN algo

Yao Zhou 6 Apr 12, 2020