Generate knowledge graphs with interesting geometries, like lattices

Overview

Geometric Graphs

Tests Cookiecutter template from @cthoyt PyPI PyPI - Python Version PyPI - License Documentation Status Code style: black

Generate knowledge graphs with interesting geometries, like lattices. Works on Python 3.9+ because it uses cool new features. Get out of that 2020 funk and install the most recent version of Python.

💪 Getting Started

See https://github.com/cthoyt/translational-toys for example usage to generate charts like

.

🚀 Installation

The most recent release can be installed from PyPI with:

$ pip install geometric_graphs

The most recent code and data can be installed directly from GitHub with:

$ pip install git+https://github.com/cthoyt/geometric-graphs.git

To install in development mode, use the following:

$ git clone git+https://github.com/cthoyt/geometric-graphs.git
$ cd geometric-graphs
$ pip install -e .

👐 Contributing

Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See CONTRIBUTING.rst for more information on getting involved.

👋 Attribution

⚖️ License

The code in this package is licensed under the MIT License.

🍪 Cookiecutter

This package was created with @audreyfeldroy's cookiecutter package using @cthoyt's cookiecutter-snekpack template.

🛠️ For Developers

See developer instrutions

The final section of the README is for if you want to get involved by making a code contribution.

Testing

After cloning the repository and installing tox with pip install tox, the unit tests in the tests/ folder can be run reproducibly with:

$ tox

Additionally, these tests are automatically re-run with each commit in a GitHub Action.

📦 Making a Release

After installing the package in development mode and installing tox with pip install tox, the commands for making a new release are contained within the finish environment in tox.ini. Run the following from the shell:

$ tox -e finish

This script does the following:

  1. Uses BumpVersion to switch the version number in the setup.cfg and src/geometric_graphs/version.py to not have the -dev suffix
  2. Packages the code in both a tar archive and a wheel
  3. Uploads to PyPI using twine. Be sure to have a .pypirc file configured to avoid the need for manual input at this step
  4. Push to GitHub. You'll need to make a release going with the commit where the version was bumped.
  5. Bump the version to the next patch. If you made big changes and want to bump the version by minor, you can use tox -e bumpversion minor after.
Owner
Charles Tapley Hoyt
Bio/cheminformatician, open scientist, maintainer of @pybel and @pykeen, part of @indralab (he/him)
Charles Tapley Hoyt
Simple Python interface for Graphviz

Simple Python interface for Graphviz

Sebastian Bank 1.3k Dec 26, 2022
Productivity Tools for Plotly + Pandas

Cufflinks This library binds the power of plotly with the flexibility of pandas for easy plotting. This library is available on https://github.com/san

Jorge Santos 2.7k Dec 30, 2022
Example scripts for generating plots of Bohemian matrices

Bohemian Eigenvalue Plotting Examples This repository contains examples of generating plots of Bohemian eigenvalues. The examples in this repository a

Bohemian Matrices 5 Nov 12, 2022
Simple and fast histogramming in Python accelerated with OpenMP.

pygram11 Simple and fast histogramming in Python accelerated with OpenMP with help from pybind11. pygram11 provides functions for very fast histogram

Doug Davis 28 Dec 14, 2022
A simple Monte Carlo simulation using Python and matplotlib library

Monte Carlo python simulation Install linux dependencies sudo apt update sudo apt install build-essential \ software-properties-commo

Samuel Terra 2 Dec 13, 2021
Function Plotter: a simple application with GUI to plot mathematical functions

Function-Plotter Function Plotter is a simple application with GUI to plot mathe

Mohamed Nabawe 4 Jan 03, 2022
Data parsing and validation using Python type hints

pydantic Data validation and settings management using Python type hinting. Fast and extensible, pydantic plays nicely with your linters/IDE/brain. De

Samuel Colvin 12.1k Jan 06, 2023
Make visual music sheets for thatskygame (graphical representations of the Sky keyboard)

sky-python-music-sheet-maker This program lets you make visual music sheets for Sky: Children of the Light. It will ask you a few questions, and does

21 Aug 26, 2022
Squidpy is a tool for the analysis and visualization of spatial molecular data.

Squidpy is a tool for the analysis and visualization of spatial molecular data. It builds on top of scanpy and anndata, from which it inherits modularity and scalability. It provides analysis tools t

Theis Lab 251 Dec 19, 2022
plotly scatterplots which show molecule images on hover!

molplotly Plotly scatterplots which show molecule images on hovering over the datapoints! Required packages: pandas rdkit jupyter_dash ➡️ See example.

150 Dec 28, 2022
Generate graphs with NetworkX, natively visualize with D3.js and pywebview

webview_d3 This is some PoC code to render graphs created with NetworkX natively using D3.js and pywebview. The main benifit of this approac

byt3bl33d3r 68 Aug 18, 2022
A small timeseries transformation API built on Flask and Pandas

#Mcflyin ###A timeseries transformation API built on Pandas and Flask This is a small demo of an API to do timeseries transformations built on Flask a

Rob Story 84 Mar 25, 2022
Python script for writing text on github contribution chart.

Github Contribution Drawer Python script for writing text on github contribution chart. Requirements Python 3.X Getting Started Create repository Put

Steven 0 May 27, 2022
100 data puzzles for pandas, ranging from short and simple to super tricky (60% complete)

100 pandas puzzles Puzzles notebook Solutions notebook Inspired by 100 Numpy exerises, here are 100* short puzzles for testing your knowledge of panda

Alex Riley 1.9k Jan 08, 2023
Runtime analysis of code with plotting

Runtime analysis of code with plotting A quick comparison among Python, Cython, and the C languages A Programming Assignment regarding the Programming

Cena Ashoori 2 Dec 24, 2021
A blender import/export system for Defold

defold-blender-export A Blender export system for the Defold game engine. Setup Notes There are no exhaustive documents for this tool yet. Its just no

David Lannan 27 Dec 30, 2022
Interactive Dashboard for Visualizing OSM Data Change

Dashboard and intuitive data downloader for more interactive experience with interpreting osm change data.

1 Feb 20, 2022
Python script to generate a visualization of various sorting algorithms, image or video.

sorting_algo_visualizer Python script to generate a visualization of various sorting algorithms, image or video.

146 Nov 12, 2022
Simple Inkscape Scripting

Simple Inkscape Scripting Description In the Inkscape vector-drawing program, how would you go about drawing 100 diamonds, each with a random color an

Scott Pakin 140 Dec 27, 2022
Visualize large time-series data in plotly

plotly_resampler enables visualizing large sequential data by adding resampling functionality to Plotly figures. In this Plotly-Resampler demo over 11

PreDiCT.IDLab 604 Dec 28, 2022