LERP : Label-dependent and event-guided interpretable disease risk prediction using EHRs

Related tags

Deep LearningLERP
Overview

LERP : Label-dependent and event-guided interpretable disease risk prediction using EHRs

This is the code for the LERP.

image

Dataset

  1. The dataset used is MIMIC-III, you should download it from https://physionet.org/content/mimiciii/1.4/ first.

  2. Then, you should use MIMI-III benchmark tool to generate the Phenotype classification.

  3. Next, you should use the py files under the folder of data_processing.

 python data_processing/generate_event.py 
 python data_processing/generate_text.py
 data_processing/split_data.py 

Training

After you generate the dataset, you could use:

    python trainer_text_event.py

to train the LERP

Evaluation and case study

You could use the following commands to evaluate the LERP model and check the case study result.

    python evaluation_text_event.py
    python case_study_text_event.py
Luminous is a framework for testing the performance of Embodied AI (EAI) models in indoor tasks.

Luminous is a framework for testing the performance of Embodied AI (EAI) models in indoor tasks. Generally, we intergrete different kind of functional

28 Jan 08, 2023
Random Walk Graph Neural Networks

Random Walk Graph Neural Networks This repository is the official implementation of Random Walk Graph Neural Networks. Requirements Code is written in

Giannis Nikolentzos 38 Jan 02, 2023
Christmas face app for Decathlon xmas coding party!

Christmas Face Application Use this library to create the perfect picture for your christmas cards! Done by Hasib Zunair, Guillaume Brassard and Samue

Hasib Zunair 4 Dec 20, 2021
FedMM: Saddle Point Optimization for Federated Adversarial Domain Adaptation

This repository contains the code accompanying the paper " FedMM: Saddle Point Optimization for Federated Adversarial Domain Adaptation" Paper link: R

20 Jun 29, 2022
This repo implements several applications of the proposed generalized Bures-Wasserstein (GBW) geometry on symmetric positive definite matrices.

GBW This repo implements several applications of the proposed generalized Bures-Wasserstein (GBW) geometry on symmetric positive definite matrices. Ap

Andi Han 0 Oct 22, 2021
Alfred-Restore-Iterm-Arrangement - An Alfred workflow to restore iTerm2 window Arrangements

Alfred-Restore-Iterm-Arrangement This alfred workflow will list avaliable iTerm2

7 May 10, 2022
Learning Intents behind Interactions with Knowledge Graph for Recommendation, WWW2021

Learning Intents behind Interactions with Knowledge Graph for Recommendation This is our PyTorch implementation for the paper: Xiang Wang, Tinglin Hua

158 Dec 15, 2022
Torch-based tool for quantizing high-dimensional vectors using additive codebooks

Trainable multi-codebook quantization This repository implements a utility for use with PyTorch, and ideally GPUs, for training an efficient quantizer

Daniel Povey 41 Jan 07, 2023
PyKaldi GOP-DNN on Epa-DB

PyKaldi GOP-DNN on Epa-DB This repository has the tools to run a PyKaldi GOP-DNN algorithm on Epa-DB, a database of non-native English speech by Spani

18 Dec 14, 2022
Voxel Transformer for 3D object detection

Voxel Transformer This is a reproduced repo of Voxel Transformer for 3D object detection. The code is mainly based on OpenPCDet. Introduction We provi

173 Dec 25, 2022
LiDAR Distillation: Bridging the Beam-Induced Domain Gap for 3D Object Detection

LiDAR Distillation Paper | Model LiDAR Distillation: Bridging the Beam-Induced Domain Gap for 3D Object Detection Yi Wei, Zibu Wei, Yongming Rao, Jiax

Yi Wei 75 Dec 22, 2022
Implementation of PyTorch-based multi-task pre-trained models

mtdp Library containing implementation related to the research paper "Multi-task pre-training of deep neural networks for digital pathology" (Mormont

Romain Mormont 27 Oct 14, 2022
IDA file loader for UF2, created for the DEFCON 29 hardware badge

UF2 Loader for IDA The DEFCON 29 badge uses the UF2 bootloader, which conveniently allows you to dump and flash the firmware over USB as a mass storag

Kevin Colley 6 Feb 08, 2022
Deep Learning and Logical Reasoning from Data and Knowledge

Logic Tensor Networks (LTN) Logic Tensor Network (LTN) is a neurosymbolic framework that supports querying, learning and reasoning with both rich data

171 Dec 29, 2022
Election Exit Poll Prediction and U.S.A Presidential Speech Analysis using Machine Learning

Machine_Learning Election Exit Poll Prediction and U.S.A Presidential Speech Analysis using Machine Learning This project is based on 2 case-studies:

Avnika Mehta 1 Jan 27, 2022
Repository for the paper "Online Domain Adaptation for Occupancy Mapping", RSS 2020

RSS 2020 - Online Domain Adaptation for Occupancy Mapping Repository for the paper "Online Domain Adaptation for Occupancy Mapping", Robotics: Science

Anthony 26 Sep 22, 2022
Deep Learning pipeline for motor-imagery classification.

BCI-ToolBox 1. Introduction BCI-ToolBox is deep learning pipeline for motor-imagery classification. This repo contains five models: ShallowConvNet, De

DongHee 18 Oct 31, 2022
ERISHA is a mulitilingual multispeaker expressive speech synthesis framework. It can transfer the expressivity to the speaker's voice for which no expressive speech corpus is available.

ERISHA: Multilingual Multispeaker Expressive Text-to-Speech Library ERISHA is a multilingual multispeaker expressive speech synthesis framework. It ca

Ajinkya Kulkarni 43 Nov 27, 2022
minimizer-space de Bruijn graphs (mdBG) for whole genome assembly

rust-mdbg: Minimizer-space de Bruijn graphs (mdBG) for whole-genome assembly rust-mdbg is an ultra-fast minimizer-space de Bruijn graph (mdBG) impleme

Barış Ekim 148 Dec 01, 2022
Pytorch reimplementation of the Mixer (MLP-Mixer: An all-MLP Architecture for Vision)

MLP-Mixer Pytorch reimplementation of Google's repository for the MLP-Mixer (Not yet updated on the master branch) that was released with the paper ML

Eunkwang Jeon 18 Dec 08, 2022