Simple python implementation with matplotlib to manually fit MIST isochrones to Gaia DR2 color-magnitude diagrams

Overview

MIST-isochrone-widget

Simple python implementation with matplotlib to manually fit MIST isochrones to Gaia DR2 color-magnitude diagrams

This widget was primarily made to illustrate how cluster properties like Age, Extinction(Av), distance, and FeH can be derived by fitting an isochrone to the cluster's color-magnitude sequence.

The code here relies primarily on the isochrones package developed by Timothy Morton, which can be found here at github link.

The isochrones package can be installed with 'pip install isochrones' Installing the isochrones package will install most of the packages needed to run this widget. Nonetheless, you should have the following packages for this widget:

  • Numpy
  • Matplotlib
  • Pandas

WARNING Upon running the MIST_isochrone_class for the first time, the isochrones package will initially produce an interpolation directory and table of isochrones that downloads from the MIST website server. All in all this interpolation/generation takes a few minutes and produces files/directories totalling 15Gb. Once these files are generated, you should be able generate isochrones on the relatively easily.

If you wish to avoid this interpolation step and want to jump right into creating isochrones, I am providing a link to a precompile directory of all necessary evolutionary tracks and their bolometric corrections to generate isochrones in Gaia DR2 [G, BP, RP] passbands. The files contains UBVRI passbands as well as WISE passbands. The directory is tar zipped and can be extracted with " tar -xvzf isochrones_precompiled_data.tar.gz "

The compressed directory can be downloaded from this One-drive-link The .isochrones directory will look like this once unzipped:

|── .isochrones
   ├── BC
   |   ├──mist
   |        ├── UBVRIplus and WISE passband files
   ├── mist
       ├──tracks
           ├──array_grid_v1.2_vvcrit0.4.npz
           ├──full_grid_v1.2_vvcrit0.4.npz
           ├──dt_deep_v1.2_vvcrit0.4.h5
           ├──mist_v1.2_vvcrit0.4.h5

Please Note It is important that the file be extracted into your username directory, such that the resulting pathway looks like " /Users/your_user_name/.isochrones ". This will ensure that the isochrones package seemlessly finds the preconstructed isochrone grids. Otherwise it will start the automatic downloading from the MIST servers and begin the grid construction on its own (That big 15GB step).

Using the isochrone widget for the first time

DON'T FORGET TO SET THE BASE DIRECTORY FOR THE WIDGET This can be done by changing the following line in run_isochrone_widget.py (line #16):

RepoDIR = "YOUR_REPOSITORY_DIRECTORY/MIST-isochrone-widget/"

To the directory into which you download this REPO.

Running the widget

The widget can be called from a terminal by typing: " python run_isochrone_widget.py "

After which the following should appear in your terminal:

Holoviews not imported. Some visualizations will not be available.
PyMultiNest not imported.  MultiNest fits will not work.
Initializing isochrone class object (takes a second...)
Initialization done

Once that is completed the matplotlib figure should appear and you're ready to explore with the sliders and the pre-loaded cluster buttons.

Unfortunately, sometimes the matplotlib figure will 'freeze' when being called within the ipython terminal. I have not found that to be the case when calling the function with python, so that's the more reliable way to use this widget if using it to teach in a lecture or lab.

Owner
Karl Jaehnig
Ph.D candidate in Astrophysics at Vanderbilt University LSSTC Data Science Fellow Fisk-Vanderbilt Bridge Fellow
Karl Jaehnig
RockNext is an Open Source extending ERPNext built on top of Frappe bringing enterprise ready utilization.

RockNext is an Open Source extending ERPNext built on top of Frappe bringing enterprise ready utilization.

Matheus Breguêz 13 Oct 12, 2022
Custom Plotly Dash components based on Mantine React Components library

Dash Mantine Components Dash Mantine Components is a Dash component library based on Mantine React Components Library. It makes it easier to create go

Snehil Vijay 239 Jan 08, 2023
Numerical methods for ordinary differential equations: Euler, Improved Euler, Runge-Kutta.

Numerical methods Numerical methods for ordinary differential equations are methods used to find numerical approximations to the solutions of ordinary

Aleksey Korshuk 5 Apr 29, 2022
Runtime analysis of code with plotting

Runtime analysis of code with plotting A quick comparison among Python, Cython, and the C languages A Programming Assignment regarding the Programming

Cena Ashoori 2 Dec 24, 2021
A GUI for Pandas DataFrames

About Demo Installation Usage Features More Info About PandasGUI is a GUI for viewing, plotting and analyzing Pandas DataFrames. Demo Installation Ins

Adam Rose 2.8k Dec 24, 2022
Generate SVG (dark/light) images visualizing (private/public) GitHub repo statistics for profile/website.

Generate daily updated visualizations of GitHub user and repository statistics from the GitHub API using GitHub Actions for any combination of private and public repositories, whether owned or contri

Adam Ross 2 Dec 16, 2022
Parallel t-SNE implementation with Python and Torch wrappers.

Multicore t-SNE This is a multicore modification of Barnes-Hut t-SNE by L. Van der Maaten with python and Torch CFFI-based wrappers. This code also wo

Dmitry Ulyanov 1.7k Jan 09, 2023
Python library that makes it easy for data scientists to create charts.

Chartify Chartify is a Python library that makes it easy for data scientists to create charts. Why use Chartify? Consistent input data format: Spend l

Spotify 3.2k Jan 01, 2023
basemap - Plot on map projections (with coastlines and political boundaries) using matplotlib.

Basemap Plot on map projections (with coastlines and political boundaries) using matplotlib. ⚠️ Warning: this package is being deprecated in favour of

Matplotlib Developers 706 Dec 28, 2022
cqMore is a CadQuery plugin based on CadQuery 2.1.

cqMore (under construction) cqMore is a CadQuery plugin based on CadQuery 2.1. Installation Please use conda to install CadQuery and its dependencies

Justin Lin 36 Dec 21, 2022
A small tool to test and visualize protein embeddings and amino acid proportions.

polyprotein_stats A small tool to test and visualize protein embeddings and amino acid proportions. Currently deployed on streamlit.io. Given a set of

2 Jan 07, 2023
Use Perspective to create the chart for the trader’s dashboard

Task Overview | Installation Instructions | Link to Module 3 Introduction Experience Technology at JP Morgan Chase Try out what real work is like in t

Abdulazeez Jimoh 1 Jan 22, 2022
Streaming pivot visualization via WebAssembly

Perspective is an interactive visualization component for large, real-time datasets. Originally developed for J.P. Morgan's trading business, Perspect

The Fintech Open Source Foundation (www.finos.org) 5.1k Dec 27, 2022
paintable GitHub contribute table

githeart paintable github contribute table how to use: Functions key color select 1,2,3,4,5 clear c drawing mode mode on turn off e print paint matrix

Bahadır Araz 27 Nov 24, 2022
Visual Python is a GUI-based Python code generator, developed on the Jupyter Notebook environment as an extension.

Visual Python is a GUI-based Python code generator, developed on the Jupyter Notebook environment as an extension.

Visual Python 564 Jan 03, 2023
The windML framework provides an easy-to-use access to wind data sources within the Python world, building upon numpy, scipy, sklearn, and matplotlib. Renewable Wind Energy, Forecasting, Prediction

windml Build status : The importance of wind in smart grids with a large number of renewable energy resources is increasing. With the growing infrastr

Computational Intelligence Group 125 Dec 24, 2022
UNMAINTAINED! Renders beautiful SVG maps in Python.

Kartograph is not maintained anymore As you probably already guessed from the commit history in this repo, Kartograph.py is not maintained, which mean

1k Dec 09, 2022
An intuitive library to add plotting functionality to scikit-learn objects.

Welcome to Scikit-plot Single line functions for detailed visualizations The quickest and easiest way to go from analysis... ...to this. Scikit-plot i

Reiichiro Nakano 2.3k Dec 31, 2022
This GitHub Repository contains Data Analysis projects that I have completed so far! While most of th project are focused on Data Analysis, some of them are also put here to show off other skills that I have learned.

Welcome to my Data Analysis projects page! This GitHub Repository contains Data Analysis projects that I have completed so far! While most of th proje

Kyle Dini 1 Jan 31, 2022
Plotting library for IPython/Jupyter notebooks

bqplot 2-D plotting library for Project Jupyter Introduction bqplot is a 2-D visualization system for Jupyter, based on the constructs of the Grammar

3.4k Dec 30, 2022