A Python wrapper of Neighbor Retrieval Visualizer (NeRV)

Overview

PyNeRV

A Python wrapper of the dimensionality reduction algorithm Neighbor Retrieval Visualizer (NeRV)

Compile

Set up the paths in Makefile then make.

Usage example

import numpy as np
import matplotlib.pyplot as plt
from nerv import NeRV

data = np.genfromtxt('dredviz-1.0.2/spheredata.dat', skip_header=1)
color = np.genfromtxt('dredviz-1.0.2/spheredata.col', skip_header=1)
nerv_obj = NeRV(random_state=0)
nerv_obj.fit(data)
print('Final cost = %g' % nerv_obj.cost_)
plt.scatter(*nerv_obj.embedding_.T, c=color)
plt.show()

which shows (right)

 

Reference

@article{venna2010information,
  title={Information retrieval perspective to nonlinear dimensionality reduction for data visualization},
  author={Venna, Jarkko and Peltonen, Jaakko and Nybo, Kristian and Aidos, Helena and Kaski, Samuel},
  journal={Journal of Machine Learning Research},
  volume={11},
  number={Feb},
  pages={451--490},
  year={2010}
}
Matplotlib tutorial for beginner

matplotlib is probably the single most used Python package for 2D-graphics. It provides both a very quick way to visualize data from Python and publication-quality figures in many formats. We are goi

Nicolas P. Rougier 2.6k Dec 28, 2022
web application for flight log analysis & review

Flight Review This is a web application for flight log analysis. It allows users to upload ULog flight logs, and analyze them through the browser. It

PX4 Drone Autopilot 145 Dec 20, 2022
ICS-Visualizer is an interactive Industrial Control Systems (ICS) network graph that contains up-to-date ICS metadata

ICS-Visualizer is an interactive Industrial Control Systems (ICS) network graph that contains up-to-date ICS metadata (Name, company, port, user manua

QeeqBox 2 Dec 13, 2021
HW 02 for CS40 - matplotlib practice

HW 02 for CS40 - matplotlib practice project instructions https://github.com/mikeizbicki/cmc-csci040/tree/2021fall/hw_02 Drake Lyric Analysis Bar Char

13 Oct 27, 2021
plotly scatterplots which show molecule images on hover!

molplotly Plotly scatterplots which show molecule images on hovering over the datapoints! Required packages: pandas rdkit jupyter_dash âžĄī¸ See example.

150 Dec 28, 2022
Profile and test to gain insights into the performance of your beautiful Python code

Profile and test to gain insights into the performance of your beautiful Python code View Demo - Report Bug - Request Feature QuickPotato in a nutshel

Joey Hendricks 138 Dec 06, 2022
A D3.js plugin that produces flame graphs from hierarchical data.

d3-flame-graph A D3.js plugin that produces flame graphs from hierarchical data. If you don't know what flame graphs are, check Brendan Gregg's post.

Martin Spier 740 Dec 29, 2022
Data Visualizations for the #30DayChartChallenge

The #30DayChartChallenge This repository contains all the charts made for the #30DayChartChallenge during the month of April. This project aims to exp

Isaac Arroyo 7 Sep 20, 2022
Graphing communities on Twitch.tv in a visually intuitive way

VisualizingTwitchCommunities This project maps communities of streamers on Twitch.tv based on shared viewership. The data is collected from the Twitch

Kiran Gershenfeld 312 Jan 07, 2023
clock_plot provides a simple way to visualize timeseries data, mapping 24 hours onto the 360 degrees of a polar plot

clock_plot clock_plot provides a simple way to visualize timeseries data mapping 24 hours onto the 360 degrees of a polar plot. For usage, please see

12 Aug 24, 2022
đŸŒ€â„ī¸đŸŒŠī¸ This repository contains some examples for creating 2d and 3d weather plots using matplotlib and cartopy libraries in python3.

Weather-Plotting 🌀 â„ī¸ đŸŒŠī¸ This repository contains some examples for creating 2d and 3d weather plots using matplotlib and cartopy libraries in pytho

Giannis Dravilas 21 Dec 10, 2022
Python library that makes it easy for data scientists to create charts.

Chartify Chartify is a Python library that makes it easy for data scientists to create charts. Why use Chartify? Consistent input data format: Spend l

Spotify 3.2k Jan 01, 2023
It's an application to calculate I from v and r. It can also plot a graph between V vs I.

Ohm-s-Law-Visualizer It's an application to calculate I from v and r using Ohm's Law. It can also plot a graph between V vs I. Story I'm doing my Unde

Sihab Sahariar 1 Nov 20, 2021
Apache Superset is a Data Visualization and Data Exploration Platform

Superset A modern, enterprise-ready business intelligence web application. Why Superset? | Supported Databases | Installation and Configuration | Rele

The Apache Software Foundation 50k Jan 06, 2023
Visualize and compare datasets, target values and associations, with one line of code.

In-depth EDA (target analysis, comparison, feature analysis, correlation) in two lines of code! Sweetviz is an open-source Python library that generat

Francois Bertrand 2.3k Jan 05, 2023
Collection of data visualizing projects through Tableau, Data Wrapper, and Power BI

Data-Visualization-Projects Collection of data visualizing projects through Tableau, Data Wrapper, and Power BI Indigenous-Brands-Social-Movements Pyt

Jinwoo(Roy) Yoon 1 Feb 05, 2022
A simple code for plotting figure, colorbar, and cropping with python

Python Plotting Tools This repository provides a python code to generate figures (e.g., curves and barcharts) that can be used in the paper to show th

Guanying Chen 134 Jan 02, 2023
finds grocery stores and stuff next to route (gpx)

Route-Report Route report is a command-line utility that can be used to locate points-of-interest near your planned route (gpx). The results are based

Clemens Mosig 5 Oct 10, 2022
Flow-based visual scripting for Python

A simple visual node editor for Python Ryven combines flow-based visual scripting with Python. It gives you absolute freedom for your nodes and a simp

Leon Thomm 3.1k Jan 06, 2023
Visualise Ansible execution time across playbooks, tasks, and hosts.

ansible-trace Visualise where time is spent in your Ansible playbooks: what tasks, and what hosts, so you can find where to optimise and decrease play

Mark Hansen 81 Dec 15, 2022