A PoC Corporation Relationship Knowledge Graph System on top of Nebula Graph.

Overview

Corp-Rel is a PoC of Corpartion Relationship Knowledge Graph System. It's built on top of the Open Source Graph Database: Nebula Graph with a dataset from nebula-shareholding-example.

corp-rel-capture.mov

Quick Start

First, please setup a Nebula Graph Cluster with data loaded from nebula-shareholding-example.

Then, clone this project:

git clone https://github.com/wey-gu/nebula-corp-rel-search.git
cd nebula-corp-rel-search

Start the backend:

python3 -m pip install -r requirements.txt
cd corp-rel-backend
export NG_ENDPOINTS="192.168.123.456:9669" # This should be your Nebula Graph Cluster GraphD Endpoint
python3 app.py

Start the frontend in another terminal:

npm install -g @vue/cli
cd nebula-corp-rel-search/corp-rel-frontend
vue serve src/main.js

Start a reverse Proxy to enable Corp-Rel Backend being served with same origin of Frontend:

For example below is a Nginx config to make :8081/ go to http://localhost:8080 and :8081/api go to http://192.168.123.456:5000/api.

http {
    include       mime.types;
    default_type  application/octet-stream;

    keepalive_timeout  65;

    server {
        listen       8081;
        server_name  localhost;
        # frontend
        location / {
            proxy_pass http://localhost:8080;
        }
        # backend
        location /api {
            proxy_pass http://192.168.123.456:5000/api;
        }
    }
#...

After above reverse proxy being configured, let's verify it via cURL:

curl --header "Content-Type: application/json" \
     --request POST \
     --data '{"entity": "c_132"}' \
     http://localhost:8081/api | jq

If it's properly responded, hen we could go to http://localhost:8081 from the web browser :).

Design Log

data from Backend Side

Backend should query node's relationship path as follow:

MATCH p=(v)-[e:hold_share|:is_branch_of|:reletive_with|:role_as*1..3]-(v2) \
WHERE id(v) IN ["c_132"] RETURN p LIMIT 100

An example of the query will be like this:

([email protected]) [shareholding]> MATCH p=(v)-[e:hold_share|:is_branch_of|:reletive_with|:role_as*1..3]-(v2) \
                           -> WHERE id(v) IN ["c_132"] RETURN p LIMIT 100
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| p                                                                                                                                                                                                                                        |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| <("c_132" :corp{name: "Chambers LLC"})<-[:[email protected] {share: 0.0}]-("c_245" :corp{name: "Thompson-King"})>                                                                                                                             |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| <("c_132" :corp{name: "Chambers LLC"})<-[:[email protected] {share: 3.0}]-("p_1039" :person{name: "Christian Miller"})>                                                                                                                       |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| <("c_132" :corp{name: "Chambers LLC"})<-[:[email protected] {share: 3.0}]-("p_1399" :person{name: "Sharon Gonzalez"})>                                                                                                                        |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| <("c_132" :corp{name: "Chambers LLC"})<-[:[email protected] {share: 9.0}]-("p_1767" :person{name: "Dr. David Vance"})>                                                                                                                        |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| <("c_132" :corp{name: "Chambers LLC"})<-[:[email protected] {share: 11.0}]-("p_1997" :person{name: "Glenn Reed"})>                                                                                                                            |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
| <("c_132" :corp{name: "Chambers LLC"})<-[:[email protected] {share: 14.0}]-("p_2341" :person{name: "Jessica Baker"})>                                                                                                                         |
+------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------+
...

Leveraging nebula2-python, we could have result in below data structure:

$ python3 -m pip install nebula2-python==2.5.0
$ ipython
In [1]: from nebula2.gclient.net import ConnectionPool
In [2]: from nebula2.Config import Config
In [3]: config = Config()
   ...: config.max_connection_pool_size = 10
   ...: # init connection pool
   ...: connection_pool = ConnectionPool()
   ...: # if the given servers are ok, return true, else return false
   ...: ok = connection_pool.init([('192.168.8.137', 9669)], config)
   ...: session = connection_pool.get_session('root', 'nebula')
[2021-10-13 13:44:24,242]:Get connection to ('192.168.8.137', 9669)

In [4]: resp = session.execute("use shareholding")
In [5]: query = '''
   ...: MATCH p=(v)-[e:hold_share|:is_branch_of|:reletive_with|:role_as*1..3]-(v2) \
   ...: WHERE id(v) IN ["c_132"] RETURN p LIMIT 100
   ...: '''
In [6]: resp = session.execute(query) # Note: after nebula graph 2.6.0, we could use execute_json as well

In [7]: resp.col_size()
Out[7]: 1

In [9]: resp.row_size()
Out[10]: 100

As we know the result is actually a nebula-python path type, they could be extracted as follow with .nodes() and .relationships():

In [11]: p=resp.row_values(22)[0].as_path()

In [12]: p.nodes()
Out[12]:
[("c_132" :corp{name: "Chambers LLC"}),
 ("p_4000" :person{name: "Colton Bailey"})]

In [13]: p.relationships()
Out[13]: [("p_4000")-[:role_as@0{role: "Editorial assistant"}]->("c_132")]

For relationships/edges, we could call its .edge_name(), .properties(), .start_vertex_id(), .end_vertex_id():

In [14]: rel=p.relationships()[0]

In [15]: rel
Out[15]: ("p_4000")-[:role_as@0{role: "Editorial assistant"}]->("c_132")

In [16]: rel.edge_name()
Out[16]: 'role_as'

In [17]: rel.properties()
Out[17]: {'role': "Editorial assistant"}

In [18]: rel.start_vertex_id()
Out[18]: "p_4000"

In [19]: rel.end_vertex_id()
Out[19]: "c_132"

And for nodes/vertices, we could call its .tags(), properties, get_id():

In [20]: node=p.nodes()[0]

In [21]: node.tags()
Out[21]: ['corp']

In [22]: node.properties('corp')
Out[22]: {'name': "Chambers LLC"}

In [23]: node.get_id()
Out[23]: "c_132"

Data visualization

For the frontend, we could create a view by leveraging vue-network-d3:

npm install vue-network-d3 --save
touch src/App.vue
touch src/main.js

In src/App.vue, we create a Network instance and fill in the nodeList, and linkList fetched from backend, in below example, we put fake data as:

nodes: [
        {"id": "c_132", "name": "Chambers LLC", "tag": "corp"},
        {"id": "p_4000", "name": "Colton Bailey", "tag": "person"}],
relationships: [
        {"source": "p_4000", "target": "c_132", "properties": { "role": "Editorial assistant" }, "edge": "role_as"}]

And the full example of src/App.vue will be:

<template>
  <div id="app">
    <network
      :nodeList="nodes"
      :linkList="relationships"
      :nodeSize="nodeSize"
      :linkWidth="linkWidth"
      :linkDistance="linkDistance"
      :linkTextFrontSize="linkTextFrontSize"
      :nodeTypeKey="nodeTypeKey"
      :linkTypeKey="linkTypeKey"
      :nodeTextKey="nodeTextKey"
      :linkTextKey="linkTextKey"
      :showNodeText="showNodeText"
      :showLinkText="showLinkText"
      >
    </network>
  </div>
</template>

<script>
import Network from "vue-network-d3";

export default {
  name: "app",
  components: {
    Network
  },
  data() {
    return {
      nodes: [
        {"id": "c_132", "name": "Chambers LLC", "tag": "corp"},
        {"id": "p_4000", "name": "Colton Bailey", "tag": "person"}
      ],
      relationships: [
        {"source": "p_4000", "target": "c_132", "properties": { "role": "Editorial assistant" }, "edge": "role_as"}
      ],
      nodeSize: 18,
      linkDistance: 120,
      linkWidth: 6,
      linkTextFrontSize: 20,
      nodeTypeKey: "tag",
      linkTypeKey: "edge",
      nodeTextKey: "name",
      linkTextKey: "properties",
      showNodeText: true,
      showLinkText: true
    };
  },
};
</script>

<style>
body {
  margin: 0;
}
</style>

Together with src/main.js:

import Vue from 'vue'
import App from './App.vue'

Vue.config.productionTip = false

new Vue({
  render: h => h(App),
}).$mount('#app')

Then we could run: vue serve src/main.js to have this renderred:

vue-network-d3-demo

The data construction in Back End:

Thus we shoud know that if the backend provides list of nodes and relationships in JSON as the following, things are perfectly connected!

Nodes:

[{"id": "c_132", "name": "Chambers LLC", "tag": "corp"},
 {"id": "p_4000", "name": "Colton Bailey", "tag": "person"}]

Relationships:

[{"source": "p_4000", "target": "c_132", "properties": { "role": "Editorial assistant" }, "edge": "role_as"},
 {"source": "p_1039", "target": "c_132", "properties": { "share": "3.0" }, "edge": "hold_share"}]

We could construct it as:

def make_graph_response(resp) -> dict:
    nodes, relationships = list(), list()
    for row_index in range(resp.row_size()):
        path = resp.row_values(row_index)[0].as_path()
        _nodes = [
            {
                "id": node.get_id(), "tag": node.tags()[0],
                "name": node.properties(node.tags()[0]).get("name", "")
                }
                for node in path.nodes()
        ]
        nodes.extend(_nodes)
        _relationships = [
            {
                "source": rel.start_vertex_id(),
                "target": rel.end_vertex_id(),
                "properties": rel.properties(),
                "edge": rel.edge_name()
                }
                for rel in path.relationships()
        ]
        relationships.extend(_relationships)
    return {"nodes": nodes, "relationships": relationships}

The Flask App

Then Let's create a Flask App to consume the HTTP API request and return the data designed as above.

from flask import Flask, jsonify, request



app = Flask(__name__)


@app.route("/")
def root():
    return "Hey There?"


@app.route("/api", methods=["POST"])
def api():
    request_data = request.get_json()
    entity = request_data.get("entity", "")
    if entity:
        resp = query_shareholding(entity)
        data = make_graph_response(resp)
    else:
        data = dict() # tbd
    return jsonify(data)


def parse_nebula_graphd_endpoint():
    ng_endpoints_str = os.environ.get(
        'NG_ENDPOINTS', '127.0.0.1:9669,').split(",")
    ng_endpoints = []
    for endpoint in ng_endpoints_str:
        if endpoint:
            parts = endpoint.split(":")  # we dont consider IPv6 now
            ng_endpoints.append((parts[0], int(parts[1])))
    return ng_endpoints

def query_shareholding(entity):
    query_string = (
        f"USE shareholding; "
        f"MATCH p=(v)-[e:hold_share|:is_branch_of|:reletive_with|:role_as*1..3]-(v2) "
        f"WHERE id(v) IN ['{ entity }'] RETURN p LIMIT 100"
    )
    session = connection_pool.get_session('root', 'nebula')
    resp = session.execute(query_string)
    return resp

And by starting this Flask App instance:

export NG_ENDPOINTS="192.168.8.137:9669"
python3 app.py

 * Serving Flask app 'app' (lazy loading)
 * Environment: production
   WARNING: This is a development server. Do not use it in a production deployment.
   Use a production WSGI server instead.
 * Debug mode: off
[2021-10-13 18:30:17,574]: * Running on all addresses.
   WARNING: This is a development server. Do not use it in a production deployment.
[2021-10-13 18:30:17,574]: * Running on http://192.168.10.14:5000/ (Press CTRL+C to quit)

we could then query the API with cURL like this:

curl --header "Content-Type: application/json" \
     --request POST \
     --data '{"entity": "c_132"}' \
     http://192.168.10.14:5000/api | jq

{
  "nodes": [
    {
      "id": "c_132",
      "name": "\"Chambers LLC\"",
      "tag": "corp"
    },
    {
      "id": "c_245",
      "name": "\"Thompson-King\"",
      "tag": "corp"
    },
    {
      "id": "c_132",
      "name": "\"Chambers LLC\"",
      "tag": "corp"
    },
...
    }
  ],
  "relationships": [
    {
      "edge": "hold_share",
      "properties": "{'share': 0.0}",
      "source": "c_245",
      "target": "c_132"
    {
      "edge": "hold_share",
      "properties": "{'share': 9.0}",
      "source": "p_1767",
      "target": "c_132"
    },
    {
      "edge": "hold_share",
      "properties": "{'share': 11.0}",
      "source": "p_1997",
      "target": "c_132"
    },
...
    },
    {
      "edge": "reletive_with",
      "properties": "{'degree': 51}",
      "source": "p_7283",
      "target": "p_4723"
    }
  ]
}

Upstreams Projects

Owner
Wey Gu
Developer Advocate @vesoft-inc
Wey Gu
Accurate identification of bacteriophages from metagenomic data using Transformer

PhaMer is a python library for identifying bacteriophages from metagenomic data. PhaMer is based on a Transorfer model and rely on protein-based vocab

Kenneth Shang 9 Nov 30, 2022
WORD: Revisiting Organs Segmentation in the Whole Abdominal Region

WORD: Revisiting Organs Segmentation in the Whole Abdominal Region (Paper and DataSet). [New] Note that all the emails about the download permission o

Healthcare Intelligence Laboratory 71 Dec 22, 2022
RepMLP: Re-parameterizing Convolutions into Fully-connected Layers for Image Recognition

RepMLP: Re-parameterizing Convolutions into Fully-connected Layers for Image Recognition (PyTorch) Paper: https://arxiv.org/abs/2105.01883 Citation: @

260 Jan 03, 2023
This is the official implementation of VaxNeRF (Voxel-Accelearated NeRF).

VaxNeRF Paper | Google Colab This is the official implementation of VaxNeRF (Voxel-Accelearated NeRF). This codebase is implemented using JAX, buildin

naruya 132 Nov 21, 2022
Implementation of SwinTransformerV2 in TensorFlow.

SwinTransformerV2-TensorFlow A TensorFlow implementation of SwinTransformerV2 by Microsoft Research Asia, based on their official implementation of Sw

Phan Nguyen 2 May 30, 2022
The Official PyTorch Implementation of DiscoBox.

DiscoBox: Weakly Supervised Instance Segmentation and Semantic Correspondence from Box Supervision Paper | Project page | Demo (Youtube) | Demo (Bilib

NVIDIA Research Projects 89 Jan 09, 2023
Using BERT+Bi-LSTM+CRF

Chinese Medical Entity Recognition Based on BERT+Bi-LSTM+CRF Step 1 I share the dataset on my google drive, please download the whole 'CCKS_2019_Task1

Xiang WU 55 Dec 21, 2022
Seach Losses of our paper 'Loss Function Discovery for Object Detection via Convergence-Simulation Driven Search', accepted by ICLR 2021.

CSE-Autoloss Designing proper loss functions for vision tasks has been a long-standing research direction to advance the capability of existing models

Peidong Liu(刘沛东) 54 Dec 17, 2022
Ensembling Off-the-shelf Models for GAN Training

Data-Efficient GANs with DiffAugment project | paper | datasets | video | slides Generated using only 100 images of Obama, grumpy cats, pandas, the Br

MIT HAN Lab 1.2k Dec 26, 2022
Lecture materials for Cornell CS5785 Applied Machine Learning (Fall 2021)

Applied Machine Learning (Cornell CS5785, Fall 2021) This repo contains executable course notes and slides for the Applied ML course at Cornell and Co

Volodymyr Kuleshov 103 Dec 31, 2022
[CVPR 2021] Few-shot 3D Point Cloud Semantic Segmentation

Few-shot 3D Point Cloud Semantic Segmentation Created by Na Zhao from National University of Singapore Introduction This repository contains the PyTor

117 Dec 27, 2022
Random Erasing Data Augmentation. Experiments on CIFAR10, CIFAR100 and Fashion-MNIST

Random Erasing Data Augmentation =============================================================== black white random This code has the source code for

Zhun Zhong 654 Dec 26, 2022
Inference pipeline for our participation in the FeTA challenge 2021.

feta-inference Inference pipeline for our participation in the FeTA challenge 2021. Team name: TRABIT Installation Download the two folders in https:/

Lucas Fidon 2 Apr 13, 2022
A web porting for NVlabs' StyleGAN2, to facilitate exploring all kinds characteristic of StyleGAN networks

This project is a web porting for NVlabs' StyleGAN2, to facilitate exploring all kinds characteristic of StyleGAN networks. Thanks for NVlabs' excelle

K.L. 150 Dec 15, 2022
Official Implementation for Fast Training of Neural Lumigraph Representations using Meta Learning.

Fast Training of Neural Lumigraph Representations using Meta Learning Project Page | Paper | Data Alexander W. Bergman, Petr Kellnhofer, Gordon Wetzst

Alex 39 Oct 08, 2022
Teaching end to end workflow of deep learning

Deep-Education This repository is now available for public use for teaching end to end workflow of deep learning. This implies that learners/researche

Data Lab at College of William and Mary 2 Sep 26, 2022
Official implementation of the paper Label-Efficient Semantic Segmentation with Diffusion Models

Label-Efficient Semantic Segmentation with Diffusion Models Official implementation of the paper Label-Efficient Semantic Segmentation with Diffusion

Yandex Research 355 Jan 06, 2023
A platform to display the carbon neutralization information for researchers, decision-makers, and other participants in the community.

Welcome to Carbon Insight Carbon Insight is a platform aiming to display the carbon neutralization roadmap for researchers, decision-makers, and other

Microsoft 14 Oct 24, 2022
EZ graph is an easy to use AI solution that allows you to make and train your neural networks without a single line of code.

EZ-Graph EZ Graph is a GUI that allows users to make and train neural networks without writing a single line of code. Requirements python 3 pandas num

1 Jul 03, 2022
One-line your code easily but still with the fun of doing so!

One-liner-iser One-line your code easily but still with the fun of doing so! Have YOU ever wanted to write one-line Python code, but don't have the sa

5 May 04, 2022