Automated machine learning: Review of the state-of-the-art and opportunities for healthcare

Last update: Dec 23, 2022

Overview

AutoML in Healthcare Review

Automated machine learning: Review of the state-of-the-art and opportunities for healthcare

Selected highlights from the 2020 AutoML Review [https://doi.org/10.1016/j.artmed.2020.101822] that reviewed over 2,160 works related to the field of automated machine learning.

The curated list of automated feature engineering tools for Automated Machine Learning

Full details in https://www.sciencedirect.com/science/article/pii/S0933365719310437?via%3Dihub#tbl0005

Method	Work	Feature Engineering Technique	Used by how many works
Deep Feature Synthesis	LINK	Expand-Reduce	151
Explore Kit	LINK	Expand-Reduce	53
One Button Machine	LINK	Expand-Reduce	32
AutoLearn	LINK	Expand-Reduce	16
GP Feature Construction	LINK	Genetic Programming	68
Cognito	LINK	Hierarchical Greedy Search	38
RLFE	LINK	Reinforcement Learning	21
LFE	LINK	Meta-Learning	34

Automated machine learning pipeline optimizers

Full details in https://www.sciencedirect.com/science/article/pii/S0933365719310437?via%3Dihub#tbl0010

Method	Work	Optimization Algorithm	Data Pre-Processing	Feature Engineering	Model Selection	Hyperparameter Optimization	Ensemble Learning	Meta-Learning	Used by how many works
Auto-Weka	LINK	Bayesian Optimization (SMAC)	✔️		✔️	✔️			703
Auto-Sklearn	LINK	Joint Bayesian Optimization and Bandit Search (BOHB)	✔️		✔️	✔️	✔️	✔️	542
TPOT	LINK	Evolutionary Algorithm	✔️	✔️	✔️	✔️			84
TuPAQ	LINK	Bandit Search			✔️	✔️			94
ATM	LINK	Joint Bayesian Optimization and Bandit Search		✔️		✔️		✔️	29
Automatic Frankensteining	LINK	Bayesian Optimization			✔️	✔️	✔️		12
ML-Plan	LINK	Hierarchical Task Networks (HTN)	✔️		✔️	✔️			24
Autostacker	LINK	Evolutionary Algorithm			✔️	✔️	✔️		18
AlphaD3M	LINK	Reinforcement Learning/Monte Carlo Tree Search	✔️		✔️	✔️			8
Collaborative Filtering	LINK	Probabilistic Matrix Factorization	✔️		✔️	✔️		✔️	29

Neural Architecture Search algorithms, based on performance on the CIFAR-10 dataset

Full details in https://www.sciencedirect.com/science/article/pii/S0933365719310437?via%3Dihub#tbl0015

NAS Algorithm	Work	Search Space	Search Strategy	Performance Estimation Strategy	Number of Parameters	Search Time (GPU-days)	Test Error (%)
Large-scale Evolution	LINK	Feed-Forward Networks	Evolutionary Algorithm	Naive Training and Validation	5.4M	2600	5.4
EAS	LINK	Feed-Forward Networks	Reinforcement Learning and Network Morphism	Short Training and Validation	23.4M	10	4.23
Hierarchical Evolution	LINK	Cell Motifs	Evolutionary Algorithm	Training and Validation on proposed CNN Cell	15.7M	300	3.75
NAS v3	LINK	Multi-branched Networks	Reinforcement Learning	Naive Training and Validation	37.4M	22400	3.65
PNAS	LINK	Cell Motifs	Sequential Model-Based Optimization (SMBO)	Performance Prediction	3.2M	225	3.41
ENAS	LINK	Cell Motifs	Reinforcement Learning	One Shot	4.6M	0.45	2.89
ResNet + Regularization	LINK	HUMAN BASELINE	HUMAN BASELINE	HUMAN BASELINE	26.2M	-	2.86
DARTS	LINK	Cell Motifs	Gradient-Based Optimization	Training and Validation on proposed CNN Cell	3.4M	4	2.83
NASNet-A	LINK	Cell Motifs	Reinforcement Learning	Naive Training and Validation	3.3M	2000	2.65
EENA	LINK	Cell Motifs	Evolutionary Algorithm	Performance Prediction	8.5M	0.65	2.56
Path-Level EAS	LINK	Cell Motifs	Reinforcement Learning	Short Training and Validation	14.3M	200	2.30
NAO	LINK	Cell Motifs	Gradient-Based Optimization	Performance Prediction	128M	200	2.11

Automated machine learning: Review of the state-of-the-art and opportunities for healthcare

Related tags

Overview

AutoML in Healthcare Review

The curated list of automated feature engineering tools for Automated Machine Learning

Automated machine learning pipeline optimizers

Neural Architecture Search algorithms, based on performance on the CIFAR-10 dataset

Owner

EbookMLCB - ebook Machine Learning cơ bản

Repository for DCA0305, an undergraduate course about Machine Learning Workflows and Pipelines

Fundamentals of Machine Learning

Machine Learning from Scratch

Decision Weights in Prospect Theory

This is an implementation of the proximal policy optimization algorithm for the C++ API of Pytorch

Datetimes for Humans™

Predicting diabetes over a five year period using logistic regression and the Pima First-Nation dataset

Distributed Tensorflow, Keras and PyTorch on Apache Spark/Flink & Ray

PyTorch extensions for high performance and large scale training.

Sequence learning toolkit for Python

Sleep stages are classified with the help of ML. We have used 4 different ML algorithms (SVM, KNN, RF, NN) to demonstrate them

MIT-Machine Learning with Python–From Linear Models to Deep Learning

Mars is a tensor-based unified framework for large-scale data computation which scales numpy, pandas, scikit-learn and Python functions.

Breast-Cancer-Classification - Using SKLearn breast cancer dataset which contains 569 examples and 32 features classifying has been made with 6 different algorithms

Probabilistic time series modeling in Python

A basic Ray Tracer that exploits numpy arrays and functions to work fast.

A toolkit for making real world machine learning and data analysis applications in C++

SageMaker Python SDK is an open source library for training and deploying machine learning models on Amazon SageMaker.

Penguins species predictor app is used to classify penguins species created using python's scikit-learn, fastapi, numpy and joblib packages.