Pytorch implementation of PTNet for high-resolution and longitudinal infant MRI synthesis

Related tags

Deep LearningPTNet
Overview

Pyramid Transformer Net (PTNet)

Project | Paper

Pytorch implementation of PTNet for high-resolution and longitudinal infant MRI synthesis.

PTNet: A High-Resolution Infant MRI Synthesizer Based on Transformer
Xuzhe Zhang1, Xinzi He1, Jia Guo2, Nabil Ettehadi1, Natalie Aw2, David Semanek2, Jonathan Posner2, Andrew Laine1, Yun Wang2
1Columbia University Department of Biomedical Engineering, 2CUMC Department of Psychiatry

Usage and Demo

Coming Soon

Prerequisites

  • Linux
  • Python3.6
  • NVIDIA GPU (11G memory or larger) + CUDA cuDNN

Getting Started

Installation

coming soon

Testing

coming soon

Dataset

coming soon

Training

coming soon

More Training/Test Details

coming soon

Citation

If you find this useful for your research, please use the following.

@article{zhang2021ptnet,
  title={PTNet: A High-Resolution Infant MRI Synthesizer Based on Transformer},
  author={Zhang, Xuzhe and He, Xinzi and Guo, Jia and Ettehadi, Nabil and Aw, Natalie and Semanek, David and Posner, Jonathan and Laine, Andrew and Wang, Yun},
  journal={arXiv preprint arXiv:2105.13993},
  year={2021}
}

Acknowledgments

This code borrows heavily from: Tokens-to-Token ViT: Training Vision Transformers from Scratch on ImageNet, pix2pixHD, pytorch-CycleGAN-and-pix2pix.

Owner
Xuzhe Johnny Zhang
image processing; CV; deep learning; computer-assisted medical image diagnosis/interpretation
Xuzhe Johnny Zhang
GitHub Repository
Fast RFC3339 compliant Python date-time library

udatetime: Fast RFC3339 compliant date-time library Handling date-times is a painful act because of the sheer endless amount of formats used by people

Simon Pirschel 235 Oct 25, 2022
Code/data of the paper "Hand-Object Contact Prediction via Motion-Based Pseudo-Labeling and Guided Progressive Label Correction" (BMVC2021)

Hand-Object Contact Prediction (BMVC2021) This repository contains the code and data for the paper "Hand-Object Contact Prediction via Motion-Based Ps

Takuma Yagi 13 Nov 07, 2022
ExCon: Explanation-driven Supervised Contrastive Learning

ExCon: Explanation-driven Supervised Contrastive Learning Link to the paper: https://arxiv.org/pdf/2111.14271.pdf Contributors of this repo: Zhibo Zha

Zhibo (Darren) Zhang 18 Nov 01, 2022
AirLoop: Lifelong Loop Closure Detection

AirLoop This repo contains the source code for paper: Dasong Gao, Chen Wang, Sebastian Scherer. "AirLoop: Lifelong Loop Closure Detection." arXiv prep

Chen Wang 53 Jan 03, 2023
Code implementation of Data Efficient Stagewise Knowledge Distillation paper.

Data Efficient Stagewise Knowledge Distillation Table of Contents Data Efficient Stagewise Knowledge Distillation Table of Contents Requirements Image

IvLabs 112 Dec 02, 2022
Modeling CNN layers activity with Gaussian mixture model

GMM-CNN This code package implements the modeling of CNN layers activity with Gaussian mixture model and Inference Graphs visualization technique from

3 Aug 05, 2022
HAR-stacked-residual-bidir-LSTMs - Deep stacked residual bidirectional LSTMs for HAR

HAR-stacked-residual-bidir-LSTM The project is based on this repository which is presented as a tutorial. It consists of Human Activity Recognition (H

Guillaume Chevalier 287 Dec 27, 2022
Python with OpenCV - MediaPip Framework Hand Detection

Python HandDetection Python with OpenCV - MediaPip Framework Hand Detection Explore the docs » Contact Me About The Project It is a Computer vision pa

2 Jan 07, 2022
Keras documentation, hosted live at keras.io

Keras.io documentation generator This repository hosts the code used to generate the keras.io website. Generating a local copy of the website pip inst

Keras 2k Jan 08, 2023
A collection of differentiable SVD methods and also the official implementation of the ICCV21 paper "Why Approximate Matrix Square Root Outperforms Accurate SVD in Global Covariance Pooling?"

Differentiable SVD Introduction This repository contains: The official Pytorch implementation of ICCV21 paper Why Approximate Matrix Square Root Outpe

YueSong 32 Dec 25, 2022
The Illinois repository for Climatehack (https://climatehack.ai/). We won 1st place!

Climatehack This is the repository for Illinois's Climatehack Team. We earned first place on the leaderboard with a final score of 0.87992. An overvie

Jatin Mathur 20 Jun 09, 2022
RL algorithm PPO and IRL algorithm AIRL written with Tensorflow.

RL algorithm PPO and IRL algorithm AIRL written with Tensorflow. They have a parallel sampling feature in order to increase computation speed (especially in high-performance computing (HPC)).

Fangjian Li 3 Dec 28, 2021
Deep learning-based approach to discovering Granger causality networks in multivariate time series

Granger causality discovery for neural networks.

Ian Covert 130 Jan 01, 2023
CLIPImageClassifier wraps clip image model from transformers

CLIPImageClassifier CLIPImageClassifier wraps clip image model from transformers. CLIPImageClassifier is initialized with the argument classes, these

Jina AI 6 Sep 12, 2022
Pytorch ImageNet1k Loader with Bounding Boxes.

ImageNet 1K Bounding Boxes For some experiments, you might wanna pass only the background of imagenet images vs passing only the foreground. Here, I'v

Amin Ghiasi 11 Oct 15, 2022
CCNet: Criss-Cross Attention for Semantic Segmentation (TPAMI 2020 & ICCV 2019).

CCNet: Criss-Cross Attention for Semantic Segmentation Paper Links: Our most recent TPAMI version with improvements and extensions (Earlier ICCV versi

Zilong Huang 1.3k Dec 27, 2022
[NeurIPS 2021] “Improving Contrastive Learning on Imbalanced Data via Open-World Sampling”,

Improving Contrastive Learning on Imbalanced Data via Open-World Sampling Introduction Contrastive learning approaches have achieved great success in

VITA 24 Dec 17, 2022
Ranger - a synergistic optimizer using RAdam (Rectified Adam), Gradient Centralization and LookAhead in one codebase

Ranger-Deep-Learning-Optimizer Ranger - a synergistic optimizer combining RAdam (Rectified Adam) and LookAhead, and now GC (gradient centralization) i

Less Wright 1.1k Dec 21, 2022
Markov Attention Models

Introduction This repo contains code for reproducing the results in the paper Graphical Models with Attention for Context-Specific Independence and an

Vicarious 0 Dec 09, 2021
基于Flask开发后端、VUE开发前端框架，在WEB端部署YOLOv5目标检测模型

基于Flask开发后端、VUE开发前端框架，在WEB端部署YOLOv5目标检测模型

37 Jan 01, 2023