GPU Accelerated Non-rigid ICP for surface registration

Overview

GPU Accelerated Non-rigid ICP for surface registration

Introduction

Preivous Non-rigid ICP algorithm is usually implemented on CPU, and needs to solve sparse least square problem, which is time consuming. In this repo, we implement a pytorch version NICP algorithm based on paper Amberg et al. Detailedly, we leverage the AMSGrad to optimize the linear regresssion, and then found nearest points iteratively. Additionally, we smooth the calculated mesh with laplacian smoothness term. With laplacian smoothness term, the wireframe is also more neat.


Quick Start

install

We use python3.8 and cuda10.2 for implementation. The code is tested on Ubuntu 20.04.

  • The pytorch3d cannot be installed directly from pip install pytorch3d, for the installation of pytorch3d, see pytorch3d.
  • For other packages, run
pip install -r requirements.txt
  • For the template face model, currently we use a processed version of BFM face model from 3DMMfitting-pytorch, download the BFM09_model_info.mat from 3DMMfitting-pytorch and put it into the ./BFM folder.
  • For demo, run
python demo_nicp.py

we show demo for NICP mesh2mesh and NICP mesh2pointcloud. We have two param sets for registration:

milestones = set([50, 80, 100, 110, 120, 130, 140])
stiffness_weights = np.array([50, 20, 5, 2, 0.8, 0.5, 0.35, 0.2])
landmark_weights = np.array([5, 2, 0.5, 0, 0, 0, 0, 0])

This param set is used for registration on fine grained mesh

milestones = set([50, 100])
stiffness_weights = np.array([50, 20, 5])
landmark_weights = np.array([50, 20, 5])

This param set is used for registration on noisy point clouds

Templated Model

You can also use your own templated face model with manually specified landmarks.

Todo

Currently we write some batchwise functions, but batchwise NICP is not supported now. We will support batch NICP in further releases.

You might also like...
High performance Cross-platform Inference-engine, you could run Anakin on x86-cpu,arm, nv-gpu, amd-gpu,bitmain and cambricon devices.

Anakin2.0 Welcome to the Anakin GitHub. Anakin is a cross-platform, high-performance inference engine, which is originally developed by Baidu engineer

GrabGpu_py: a scripts for grab gpu when gpu is free

GrabGpu_py a scripts for grab gpu when gpu is free. WaitCondition: gpu_memory

A Robust Non-IoU Alternative to Non-Maxima Suppression in Object Detection
A Robust Non-IoU Alternative to Non-Maxima Suppression in Object Detection

Confluence: A Robust Non-IoU Alternative to Non-Maxima Suppression in Object Detection 1. 介绍 用以替代 NMS,在所有 bbox 中挑选出最优的集合。 NMS 仅考虑了 bbox 的得分,然后根据 IOU 来

A non-linear, non-parametric Machine Learning method capable of modeling complex datasets
A non-linear, non-parametric Machine Learning method capable of modeling complex datasets

Fast Symbolic Regression Symbolic Regression is a non-linear, non-parametric Machine Learning method capable of modeling complex data sets. fastsr aim

Code for
Code for "Learning to Segment Rigid Motions from Two Frames".

rigidmask Code for "Learning to Segment Rigid Motions from Two Frames". ** This is a partial release with inference and evaluation code.

Weakly Supervised Learning of Rigid 3D Scene Flow
Weakly Supervised Learning of Rigid 3D Scene Flow

Weakly Supervised Learning of Rigid 3D Scene Flow This repository provides code and data to train and evaluate a weakly supervised method for rigid 3D

Official PyTorch implementation of CAPTRA: CAtegory-level Pose Tracking for Rigid and Articulated Objects from Point Clouds
Official PyTorch implementation of CAPTRA: CAtegory-level Pose Tracking for Rigid and Articulated Objects from Point Clouds

CAPTRA: CAtegory-level Pose Tracking for Rigid and Articulated Objects from Point Clouds Introduction This is the official PyTorch implementation of o

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators
Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators

Brax is a differentiable physics engine that simulates environments made up of rigid bodies, joints, and actuators. It's also a suite of learning algorithms to train agents to operate in these environments (PPO, SAC, evolutionary strategy, and direct trajectory optimization are implemented).

Code for ICCV 2021 paper: ARAPReg: An As-Rigid-As Possible Regularization Loss for Learning Deformable Shape Generators..
Code for ICCV 2021 paper: ARAPReg: An As-Rigid-As Possible Regularization Loss for Learning Deformable Shape Generators..

ARAPReg Code for ICCV 2021 paper: ARAPReg: An As-Rigid-As Possible Regularization Loss for Learning Deformable Shape Generators.. Installation The cod

Comments
  • Lack of file “BFM09_model_info.mat”

    Lack of file “BFM09_model_info.mat”

    Traceback (most recent call last): File "demo_nicp.py", line 28, in bfm_meshes, bfm_lm_index = load_bfm_model(torch.device('cuda:0')) File "/data/pytorch-nicp/bfm_model.py", line 15, in load_bfm_model bfm_meta_data = loadmat('BFM/BFM09_model_info.mat') File "/root/anaconda3/envs/pytorch3d/lib/python3.8/site-packages/scipy/io/matlab/mio.py", line 224, in loadmat with _open_file_context(file_name, appendmat) as f: File "/root/anaconda3/envs/pytorch3d/lib/python3.8/contextlib.py", line 113, in enter return next(self.gen) File "/root/anaconda3/envs/pytorch3d/lib/python3.8/site-packages/scipy/io/matlab/mio.py", line 17, in _open_file_context f, opened = _open_file(file_like, appendmat, mode) File "/root/anaconda3/envs/pytorch3d/lib/python3.8/site-packages/scipy/io/matlab/mio.py", line 45, in _open_file return open(file_like, mode), True FileNotFoundError: [Errno 2] No such file or directory: 'BFM/BFM09_model_info.mat'

    In 3DMMfitting-pytorch, there are only these files: BFM_exp_idx.mat BFM_front_idx.mat facemodel_info.mat README.md select_vertex_id.mat similarity_Lm3D_all.mat std_exp.txt

    opened by 675492062 2
  • What is the expected time needed for running demo_nicp.py?

    What is the expected time needed for running demo_nicp.py?

    Hello,

    On my computer it seems quite slow to run demo_nicp.py. At least it took more than 1 minutes to get final.obj. Is it correct?

    I ranAMM_NRR for non-rigit ICP registration with two 7000 vertices meshes. It needs ca 1 second with CPU on my computer. With GPU, it might be possible to do the same work in less than 100 ms?

    Thank you!

    opened by 1939938853 0
  • Hi, with landmarks: `landmarks = torch.from_numpy(np.array(landmarks)).to(device).long()`, maybe you can  reshape landmarks from torch.Size([1, 1, 68, 2]) to  torch.Size([1, 68, 2])

    Hi, with landmarks: `landmarks = torch.from_numpy(np.array(landmarks)).to(device).long()`, maybe you can reshape landmarks from torch.Size([1, 1, 68, 2]) to torch.Size([1, 68, 2])

    Hi, with landmarks: landmarks = torch.from_numpy(np.array(landmarks)).to(device).long(), maybe you can reshape landmarks from torch.Size([1, 1, 68, 2]) to torch.Size([1, 68, 2])

    Originally posted by @wuhaozhe in https://github.com/wuhaozhe/pytorch-nicp/issues/3#issuecomment-971453681 hi!I got output as torch.Size([1, 68, 512, 3]) torch.Size([1, 68, 2]) torch.Size([1, 512, 512, 3]) I think the shape of following tensors are right, but I meet the same problem. lm_vertex = torch.gather(lm_vertex, 2, column_index) RuntimeError: CUDA error: device-side assert triggered

    landmarks = torch.from_numpy(np.array(landmarks)).to(device).long()
    
    row_index = landmarks[:, :, 1].view(landmarks.shape[0], -1)
    column_index = landmarks[:, :, 0].view(landmarks.shape[0], -1)
    row_index = row_index.unsqueeze(2).unsqueeze(3).expand(landmarks.shape[0], landmarks.shape[1], shape_img.shape[2], shape_img.shape[3])
    column_index = column_index.unsqueeze(1).unsqueeze(3).expand(landmarks.shape[0], landmarks.shape[1], landmarks.shape[1], shape_img.shape[3])
    print(row_index.shape, landmarks.shape, shape_img.shape)
    
    opened by alicedingyueming 1
  • RuntimeError

    RuntimeError

    Traceback (most recent call last): File "demo_nicp.py", line 27, in target_lm_index, lm_mask = get_mesh_landmark(norm_meshes, dummy_render) File "/data/pytorch-nicp/landmark.py", line 37, in get_mesh_landmark row_index = row_index.unsqueeze(2).unsqueeze(3).expand(landmarks.shape[0], landmarks.shape[1], shape_img.shape[2], shape_img.shape[3]) RuntimeError: The expanded size of the tensor (1) must match the existing size (2) at non-singleton dimension 1. Target sizes: [1, 1, 512, 3]. Tensor sizes: [1, 2, 1, 1]

    I have already configure the environment,but it seems have some problems in the code.What can I do to solve this problem.

    opened by 675492062 8
Releases(v0.1)
Owner
Haozhe Wu
Research interests in Computer Vision and Machine Learning.
Haozhe Wu
A curated list of Generative Deep Art projects, tools, artworks, and models

Generative Deep Art A curated list of Generative Deep Art projects, tools, artworks, and models Inbox Get started with making AI art in 2022 – deeplea

Filipe Calegario 251 Jan 03, 2023
Real time Human Detection Counting

In this python project, we are going to build the Human Detection and Counting System through Webcam or you can give your own video or images. This is a deep learning project on computer vision, whic

Mir Nawaz Ahmad 2 Jun 17, 2022
Semantic Bottleneck Scene Generation

SB-GAN Semantic Bottleneck Scene Generation Coupling the high-fidelity generation capabilities of label-conditional image synthesis methods with the f

Samaneh Azadi 41 Nov 28, 2022
Collection of generative models in Tensorflow

tensorflow-generative-model-collections Tensorflow implementation of various GANs and VAEs. Related Repositories Pytorch version Pytorch version of th

3.8k Dec 30, 2022
Official pytorch implement for “Transformer-Based Source-Free Domain Adaptation”

Official implementation for TransDA Official pytorch implement for “Transformer-Based Source-Free Domain Adaptation”. Overview: Result: Prerequisites:

stanley 54 Dec 22, 2022
An efficient PyTorch library for Global Wheat Detection using YOLOv5. The project is based on this Kaggle competition Global Wheat Detection (2021).

Global-Wheat-Detection An efficient PyTorch library for Global Wheat Detection using YOLOv5. The project is based on this Kaggle competition Global Wh

Chuxin Wang 11 Sep 25, 2022
Provably Rare Gem Miner.

Provably Rare Gem Miner just another random project by yoyoismee.eth useful link main site market contract useful thing you should know read contract

34 Nov 22, 2022
Implementation of our NeurIPS 2021 paper "A Bi-Level Framework for Learning to Solve Combinatorial Optimization on Graphs".

PPO-BiHyb This is the official implementation of our NeurIPS 2021 paper "A Bi-Level Framework for Learning to Solve Combinatorial Optimization on Grap

<a href=[email protected]"> 66 Nov 23, 2022
Video Autoencoder: self-supervised disentanglement of 3D structure and motion

Video Autoencoder: self-supervised disentanglement of 3D structure and motion This repository contains the code (in PyTorch) for the model introduced

157 Dec 22, 2022
Hidden-Fold Networks (HFN): Random Recurrent Residuals Using Sparse Supermasks

Hidden-Fold Networks (HFN): Random Recurrent Residuals Using Sparse Supermasks by Ángel López García-Arias, Masanori Hashimoto, Masato Motomura, and J

Ángel López García-Arias 4 May 19, 2022
This repo provides code for QB-Norm (Cross Modal Retrieval with Querybank Normalisation)

This repo provides code for QB-Norm (Cross Modal Retrieval with Querybank Normalisation) Usage example python dynamic_inverted_softmax.py --sims_train

36 Dec 29, 2022
Use graph-based analysis to re-classify stocks and to improve Markowitz portfolio optimization

Dynamic Stock Industrial Classification Use graph-based analysis to re-classify stocks and experiment different re-classification methodologies to imp

Sheng Yang 10 Dec 05, 2022
FMA: A Dataset For Music Analysis

FMA: A Dataset For Music Analysis Michaël Defferrard, Kirell Benzi, Pierre Vandergheynst, Xavier Bresson. International Society for Music Information

Michaël Defferrard 1.8k Dec 29, 2022
lightweight python wrapper for vowpal wabbit

vowpal_porpoise Lightweight python wrapper for vowpal_wabbit. Why: Scalable, blazingly fast machine learning. Install Install vowpal_wabbit. Clone and

Joseph Reisinger 163 Nov 24, 2022
Extreme Dynamic Classifier Chains - XGBoost for Multi-label Classification

Extreme Dynamic Classifier Chains Classifier chains is a key technique in multi-label classification, sinceit allows to consider label dependencies ef

6 Oct 08, 2022
Official NumPy Implementation of Deep Networks from the Principle of Rate Reduction (2021)

Deep Networks from the Principle of Rate Reduction This repository is the official NumPy implementation of the paper Deep Networks from the Principle

Ryan Chan 49 Dec 16, 2022
VIL-100: A New Dataset and A Baseline Model for Video Instance Lane Detection (ICCV 2021)

Preparation Please see dataset/README.md to get more details about our datasets-VIL100 Please see INSTALL.md to install environment and evaluation too

82 Dec 15, 2022
Implementation of "A Deep Learning Loss Function based on Auditory Power Compression for Speech Enhancement" by pytorch

This repository is used to suspend the results of our paper "A Deep Learning Loss Function based on Auditory Power Compression for Speech Enhancement"

ScorpioMiku 19 Sep 30, 2022
A script written in Python that returns a consensus string and profile matrix of a given DNA string(s) in FASTA format.

A script written in Python that returns a consensus string and profile matrix of a given DNA string(s) in FASTA format.

Zain 1 Feb 01, 2022
Clinica is a software platform for clinical research studies involving patients with neurological and psychiatric diseases and the acquisition of multimodal data

Clinica Software platform for clinical neuroimaging studies Homepage | Documentation | Paper | Forum | See also: AD-ML, AD-DL ClinicaDL About The Proj

ARAMIS Lab 165 Dec 29, 2022